Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG861_RS21315 Genome accession   NZ_CP107811
Coordinates   4758930..4760663 (-) Length   577 a.a.
NCBI ID   WP_329195024.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00539     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4753930..4765663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG861_RS21305 (OG861_21305) - 4755707..4756930 (+) 1224 WP_330261839.1 RNA polymerase sigma factor -
  OG861_RS21310 (OG861_21310) rcrQ 4757011..4758933 (-) 1923 WP_329195027.1 ABC transporter ATP-binding protein Regulator
  OG861_RS21315 (OG861_21315) rcrP 4758930..4760663 (-) 1734 WP_329195024.1 ABC transporter ATP-binding protein Regulator
  OG861_RS21320 (OG861_21320) - 4760784..4762262 (-) 1479 WP_329195021.1 FGGY family carbohydrate kinase -
  OG861_RS21325 (OG861_21325) - 4762365..4762667 (-) 303 WP_329195019.1 YtxH domain-containing protein -
  OG861_RS21345 (OG861_21345) - 4763559..4764392 (+) 834 WP_329195017.1 class II glutamine amidotransferase -
  OG861_RS21350 (OG861_21350) - 4764438..4764851 (+) 414 WP_329195016.1 SHOCT domain-containing protein -
  OG861_RS21355 (OG861_21355) - 4764898..4765581 (+) 684 WP_329195014.1 GAP family protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62557.81 Da        Isoelectric Point: 6.3794

>NTDB_id=646543 OG861_RS21315 WP_329195024.1 4758930..4760663(-) (rcrP) [Streptomyces sp. NBC_00539]
MLIRLLRTHLRPYRKPIALLVLLQLLQTSASLYLPTLNADIIDNGVVSGDTGYILRFGALMLGVSLVQLTCNIGAVYFGA
RTAAAVGRDIRGAVFDRVQSFSARELGQFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCIGGIAMALSLDVKLSGV
LLAVVPVLGLSVGTIVFKTRPLFRTMQTRLDIVNRVLREQITGNRVIRAFVRDSYEKERFREANAELTGVSLASGKLLAL
MFPVVIVVVNISSVAVIWFGAMRVDGNGMEIGQLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTDSSVIP
PADPVRKLLRHGQLELRGADFRYPGAEAPVLRGVDLLARPGETTAVIGSTGSGKSTLLGLVPRLFDATGGEVLVDGEDVR
RLDPELLAKTVGMVPQKPYLFSGTVASNLRYGRPEATDEELWHALEVAQARGFVSALEGGLDAPITQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALALETQNATVVIVAQRVSTIRDADRIIVLDEGQVVGEGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=646543 OG861_RS21315 WP_329195024.1 4758930..4760663(-) (rcrP) [Streptomyces sp. NBC_00539]
GTGCTCATACGACTTCTGCGGACACACCTGCGTCCGTACAGGAAACCCATCGCCCTCCTGGTGCTGCTGCAACTGCTGCA
GACCAGTGCGAGCCTCTACCTGCCCACGCTCAACGCGGACATCATCGACAACGGTGTCGTCAGCGGTGACACGGGGTACA
TCCTGCGTTTCGGCGCCCTGATGCTGGGCGTGTCGCTCGTCCAGCTCACCTGCAACATCGGCGCCGTCTACTTCGGCGCC
CGCACCGCCGCCGCGGTCGGGAGGGACATCCGCGGCGCCGTCTTCGACCGGGTGCAGAGCTTCTCCGCCAGGGAGCTCGG
CCAGTTCGGCGCCCCGTCGCTGATCACCCGTACGACGAACGACGTACAGCAGGTCCAGATGCTGGTCCTGATGACCTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCATCGGCGGTATCGCCATGGCGCTGTCGCTGGACGTGAAGCTGTCCGGGGTG
CTGCTCGCCGTCGTCCCCGTCCTCGGCCTGTCCGTCGGCACGATCGTCTTCAAGACGCGCCCGCTGTTCCGCACGATGCA
GACACGGCTGGACATCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCCTTCGTCCGCGACT
CCTACGAGAAGGAGCGCTTCCGGGAGGCGAACGCGGAGCTGACCGGGGTGTCGCTGGCCTCCGGCAAGCTGCTCGCGCTG
ATGTTCCCGGTCGTCATCGTCGTCGTGAACATCTCCAGCGTCGCCGTCATCTGGTTCGGCGCGATGCGCGTGGACGGCAA
CGGCATGGAGATCGGCCAGCTGACGGCGTTCCTCGCCTACCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTGGACACCGACTCCAGCGTCATCCCG
CCGGCCGACCCGGTACGCAAGCTGCTGCGGCACGGGCAGCTGGAGCTGCGCGGCGCCGACTTCCGCTACCCGGGCGCCGA
GGCGCCGGTGCTGCGCGGGGTGGACCTGCTGGCCCGCCCGGGCGAGACGACCGCCGTCATCGGCTCGACGGGCAGCGGCA
AGTCCACGCTGCTCGGCCTGGTGCCGCGGCTGTTCGACGCGACCGGCGGCGAGGTGCTCGTCGACGGGGAGGACGTACGC
CGGCTCGACCCGGAGCTGCTGGCCAAGACGGTCGGCATGGTTCCGCAGAAGCCGTACCTGTTCTCCGGGACCGTGGCCTC
CAACCTGCGCTACGGGCGCCCCGAGGCGACGGACGAAGAGCTGTGGCACGCCCTGGAGGTGGCCCAGGCCCGCGGGTTCG
TCTCCGCACTCGAAGGGGGACTGGACGCGCCGATCACCCAGGGCGGCACCAACGTCTCCGGCGGGCAGCGCCAACGGCTG
GCGATCGCCCGCACGCTGGTGCAGCGTCCGGAGATCTATCTGTTCGACGACTCCTTCTCGGCCCTGGACTACGCGACGGA
CGCGGCGCTGCGCGCCGCGCTGGCCCTGGAGACGCAGAACGCGACCGTCGTCATCGTGGCCCAGCGGGTGTCCACGATCC
GTGACGCCGACCGGATCATCGTCCTGGACGAGGGCCAGGTGGTGGGCGAGGGGCGCCATCACGAACTGATGGCCGGCAAT
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCGGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.249

100

0.399