Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG861_RS21310 Genome accession   NZ_CP107811
Coordinates   4757011..4758933 (-) Length   640 a.a.
NCBI ID   WP_329195027.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00539     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4752011..4763933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG861_RS21295 (OG861_21295) - 4752593..4753357 (+) 765 WP_329195034.1 glucose 1-dehydrogenase -
  OG861_RS21300 (OG861_21300) - 4753511..4755592 (+) 2082 WP_329195032.1 molybdopterin oxidoreductase family protein -
  OG861_RS21305 (OG861_21305) - 4755707..4756930 (+) 1224 WP_330261839.1 RNA polymerase sigma factor -
  OG861_RS21310 (OG861_21310) rcrQ 4757011..4758933 (-) 1923 WP_329195027.1 ABC transporter ATP-binding protein Regulator
  OG861_RS21315 (OG861_21315) rcrP 4758930..4760663 (-) 1734 WP_329195024.1 ABC transporter ATP-binding protein Regulator
  OG861_RS21320 (OG861_21320) - 4760784..4762262 (-) 1479 WP_329195021.1 FGGY family carbohydrate kinase -
  OG861_RS21325 (OG861_21325) - 4762365..4762667 (-) 303 WP_329195019.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 68926.44 Da        Isoelectric Point: 5.9964

>NTDB_id=646542 OG861_RS21310 WP_329195027.1 4757011..4758933(-) (rcrQ) [Streptomyces sp. NBC_00539]
MSGPGGRMMMGPVQRSMDFKGSGKRLLGQLAQDRARIWGMVAAVVGSVACSVVGPKILGNATDLVFAGIVGRQMPAGITK
AQALDGLRARGQGGMADMLSGTDFTPGRGIDFSAVGSVAVWALVVFTLAGLLMLVATRLSNHIMNGTVFRLREELRGKLS
RLPLSYFDQQKRGEVLSRATNDIDNIGQTLQQTMGQLLNSLLTIVGVLAMMFWISPLLALVALVTIPVSVFVAAKIGKKS
QPQFVAQWKSTGALNAHVEEMYSGHTLVKVFGRQKESAAVFAEQNEALYRASFKAQLVSGIMQPVMFFISNINYVLVAVV
GGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVYELLDAREQEPDAEVPERPERLRGQVTLDKV
AFRYEPDKPLIEGLSLSVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIALDGVDVAKMTREELRTGIGMVLQDTWL
FGGTIAENIAYGASREVTREEIEEAARAAHADRFIRTLPDGYDTVLDDEGAGVSAGEKQLITIARAFLSDPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHEELLESDGAYARLYAAQFAQAVAEVD

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=646542 OG861_RS21310 WP_329195027.1 4757011..4758933(-) (rcrQ) [Streptomyces sp. NBC_00539]
ATGAGCGGGCCCGGAGGACGGATGATGATGGGGCCGGTCCAGCGGTCCATGGACTTCAAGGGATCGGGCAAGCGGCTGCT
GGGCCAGCTCGCGCAGGACCGGGCCAGGATCTGGGGCATGGTCGCGGCCGTCGTCGGCAGCGTCGCCTGCTCGGTGGTGG
GGCCGAAGATCCTCGGCAACGCCACCGACCTGGTGTTCGCCGGGATCGTCGGGCGGCAGATGCCGGCCGGGATCACCAAG
GCGCAGGCGCTGGACGGCCTGCGCGCCAGGGGGCAGGGCGGCATGGCGGACATGCTGTCCGGCACCGACTTCACCCCGGG
CCGGGGCATCGACTTCTCCGCGGTCGGGTCCGTCGCGGTCTGGGCGCTGGTGGTCTTCACCCTCGCCGGACTGCTGATGC
TGGTCGCGACGCGGCTGTCGAACCACATCATGAACGGCACCGTGTTCCGGCTGCGCGAGGAGCTGCGGGGGAAGCTGTCG
CGGCTGCCGCTGTCGTACTTCGACCAGCAGAAGCGCGGTGAGGTCCTCAGCCGCGCCACGAACGACATCGACAACATCGG
GCAGACGCTCCAGCAGACGATGGGCCAGCTGCTCAACTCGCTGCTGACGATCGTCGGCGTGCTGGCGATGATGTTCTGGA
TCTCGCCGCTGCTGGCGCTGGTCGCCCTGGTGACGATCCCCGTGTCGGTGTTCGTCGCGGCGAAGATCGGCAAGAAGTCG
CAGCCGCAGTTCGTGGCGCAGTGGAAGTCCACGGGCGCGCTCAACGCGCACGTGGAGGAGATGTACTCGGGCCACACGCT
GGTCAAGGTGTTCGGCCGGCAGAAGGAGTCCGCGGCCGTCTTCGCCGAGCAGAACGAGGCGCTGTACCGGGCCTCGTTCA
AGGCACAGCTGGTCAGCGGGATCATGCAGCCGGTGATGTTCTTCATCTCGAACATCAACTACGTGCTGGTGGCGGTGGTC
GGCGGTCTGCGGGTGGCCTCGGGTTCCCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGCCAGTTCTCGAT
GCCGCTGACGCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCCGGAGTCGCCTCGGCGGAGCGCGTGTACGAGCTGCTGG
ACGCGCGGGAGCAAGAGCCGGACGCGGAGGTTCCCGAGCGGCCGGAGCGGCTGCGGGGCCAGGTCACCCTCGACAAGGTG
GCGTTCCGCTACGAGCCGGACAAGCCGCTCATCGAGGGCCTCTCGCTGAGCGTCGAGCCGGGGCAGACGGTCGCGATCGT
CGGCCCGACGGGCGCCGGCAAGACCACGCTCGTCAACCTGCTGATGCGGTTCTACGAGGTCACCGGCGGCCGGATCGCCC
TGGACGGGGTGGACGTCGCGAAGATGACCCGCGAGGAACTGCGCACGGGCATCGGCATGGTGCTCCAGGACACCTGGCTG
TTCGGCGGCACCATCGCGGAGAACATCGCCTACGGGGCTTCGCGCGAGGTCACGCGCGAGGAGATCGAGGAGGCGGCGCG
GGCCGCGCACGCGGACCGGTTCATCCGCACCCTGCCGGACGGCTACGACACGGTGCTGGACGACGAGGGCGCGGGCGTCA
GCGCGGGTGAGAAGCAGCTCATCACGATCGCCCGGGCGTTCCTGTCGGATCCGGTGATCCTGGTGCTCGACGAGGCGACG
AGCTCAGTGGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGCGCCTCGCGCACGGCCGTACGTCCTTCGTGAT
CGCGCACCGGCTCTCCACCATCCGCGACGCGGACGTGATCCTGGTGATGGAGAATGGCTCGATCGTGGAGCAGGGCACGC
ACGAGGAACTGCTCGAGTCGGACGGCGCCTACGCGCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTGGCCGAGGTCGAC
TAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(412-561)

ABC transporter transmembrane region (ABC_membrane)

(56-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.129

96.563

0.387