Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG861_RS18335 Genome accession   NZ_CP107811
Coordinates   4064820..4065800 (+) Length   326 a.a.
NCBI ID   WP_329195981.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00539     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4059820..4070800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG861_RS18310 (OG861_18315) - 4059861..4060655 (+) 795 WP_329195986.1 oxidoreductase -
  OG861_RS18315 (OG861_18320) - 4060700..4061977 (-) 1278 WP_329195984.1 M6 family metalloprotease domain-containing protein -
  OG861_RS18320 (OG861_18325) - 4062240..4062947 (+) 708 WP_329195983.1 TetR/AcrR family transcriptional regulator -
  OG861_RS18325 (OG861_18330) - 4062962..4063462 (+) 501 Protein_3611 MFS transporter -
  OG861_RS18330 (OG861_18335) - 4063634..4064398 (+) 765 WP_329202274.1 class III extradiol ring-cleavage dioxygenase -
  OG861_RS18335 (OG861_18340) rpoS 4064820..4065800 (+) 981 WP_329195981.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG861_RS18340 (OG861_18345) - 4065994..4066944 (-) 951 WP_329195980.1 YafY family protein -
  OG861_RS18345 (OG861_18350) - 4067007..4068566 (+) 1560 WP_329195978.1 MFS transporter -
  OG861_RS18350 (OG861_18355) - 4068636..4069397 (-) 762 WP_329195977.1 DUF6227 family protein -
  OG861_RS18355 (OG861_18360) - 4069590..4070252 (+) 663 WP_329195976.1 vitamin K epoxide reductase family protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36480.16 Da        Isoelectric Point: 4.9515

>NTDB_id=646533 OG861_RS18335 WP_329195981.1 4064820..4065800(+) (rpoS) [Streptomyces sp. NBC_00539]
MATRAVARSQSTGSARAAGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVYAQQILDGAIERAGQTSPAREEL
EALAAEGERAKEVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYTKGFKFSTYATWWIRQAITRSIAD
QSRTIRLPVHLVEELGRIRRIQREFNRENGRDPEHAEIAAELDTTEKRVGDVLDWARDPVSLNMSVDDEGDTQFGDLLED
TSAISPEQSVLSLLRSEELEDLLGKLDQRTASIIKMRYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLELKRMARDT
GFDAVA

Nucleotide


Download         Length: 981 bp        

>NTDB_id=646533 OG861_RS18335 WP_329195981.1 4064820..4065800(+) (rpoS) [Streptomyces sp. NBC_00539]
ATGGCAACCCGCGCCGTCGCCCGCAGTCAGTCCACGGGCAGTGCCCGCGCCGCGGGCGGCGAGATCGCCGACCGCGACCT
GGTCGGCATGTACCTGGACGAGATCGCGCGCACCCCGCTGCTCGACGCGGCCAAGGAAGTGGAGCTGTCGCAGATCATCG
AGGCGGGCGTCTACGCCCAGCAGATCCTCGACGGTGCGATAGAGCGCGCAGGGCAGACGTCCCCGGCGCGTGAGGAGCTG
GAGGCCCTGGCGGCCGAGGGAGAGCGCGCCAAGGAAGTCTTCATCCGCTCCAACCTCCGCCTGGTCGTGGCCGTCGCCCG
CCGCTACCCGCGCAGCGGGCTCCCCCTGCTCGACCTGATCCAGGAGGGCAACGCCGGCCTGGTCCGCGCGGTCGAGAAGT
TCGACTACACCAAGGGCTTCAAGTTCTCCACGTACGCCACGTGGTGGATCCGCCAGGCCATCACCCGTTCCATCGCCGAC
CAGTCCCGGACCATCCGCCTCCCCGTCCACCTGGTCGAGGAGCTCGGCCGCATCCGCCGGATCCAGCGCGAGTTCAACCG
CGAGAACGGGCGGGACCCGGAGCACGCGGAGATCGCCGCCGAGCTGGACACGACGGAGAAGCGCGTCGGTGACGTACTGG
ACTGGGCGCGCGACCCGGTCAGCCTCAACATGTCCGTCGACGACGAGGGCGACACCCAGTTCGGGGACCTGCTGGAGGAC
ACCTCCGCGATCTCCCCGGAGCAGTCCGTGCTGTCCCTGCTCCGCAGTGAGGAGCTGGAGGACCTGCTCGGCAAGCTCGA
CCAGCGCACCGCGTCGATCATCAAGATGCGGTACGGGATCGAGGACGGGCGCGAGCGCACGCTGACCGAGGTCGGCAAGC
AGCACGGCCTGACCCGGGAGCGGATCCGGCAGATCGAGAAGCACGCGCTGCTGGAGCTCAAGCGGATGGCGCGCGACACC
GGCTTCGACGCCGTGGCCTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 region 3 (Sigma70_r3)

(173-249)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(26-59)

Sigma-70, region 4 (Sigma70_r4)

(262-314)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

39.203

92.331

0.362