Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG861_RS14400 Genome accession   NZ_CP107811
Coordinates   3258137..3258760 (+) Length   207 a.a.
NCBI ID   WP_330261721.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00539     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3253137..3263760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG861_RS14375 (OG861_14385) arfB 3253352..3253777 (-) 426 WP_190187189.1 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB -
  OG861_RS14380 (OG861_14390) - 3253948..3254523 (+) 576 WP_136213763.1 TerD family protein -
  OG861_RS14385 (OG861_14395) - 3254643..3256064 (-) 1422 WP_329197077.1 M1 family metallopeptidase -
  OG861_RS14390 (OG861_14400) - 3256100..3256627 (-) 528 WP_329197075.1 heme-binding protein -
  OG861_RS14395 (OG861_14405) - 3257004..3258140 (+) 1137 WP_329202346.1 sensor histidine kinase -
  OG861_RS14400 (OG861_14410) vraR 3258137..3258760 (+) 624 WP_330261721.1 response regulator transcription factor Regulator
  OG861_RS14405 (OG861_14415) - 3259180..3259683 (+) 504 WP_329197071.1 hypothetical protein -
  OG861_RS14410 (OG861_14420) - 3259753..3260439 (-) 687 WP_329197069.1 pentapeptide repeat-containing protein -
  OG861_RS14415 (OG861_14425) - 3260477..3260971 (-) 495 WP_329197067.1 GNAT family N-acetyltransferase -
  OG861_RS14420 (OG861_14430) - 3261089..3262468 (+) 1380 WP_329197066.1 FAD-binding oxidoreductase -
  OG861_RS14425 (OG861_14435) - 3262542..3262913 (-) 372 WP_329197064.1 hypothetical protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 21826.10 Da        Isoelectric Point: 6.1128

>NTDB_id=646520 OG861_RS14400 WP_330261721.1 3258137..3258760(+) (vraR) [Streptomyces sp. NBC_00539]
MTTILLCDDHVVVRAGLLALLGSEPDIEVLGEAGSGEEAVALAAKLRPEVVLMDLQLGAGIDGVEATRRITSAPNPPHVL
VLTTYDTDADITRAIGAGATGYLLKAERPEELFTAIHSAAAGRTTLSAPVASRVMARMRGSRPTLTDRELDILGQLARGL
GNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVSVAKEQRLLPS

Nucleotide


Download         Length: 624 bp        

>NTDB_id=646520 OG861_RS14400 WP_330261721.1 3258137..3258760(+) (vraR) [Streptomyces sp. NBC_00539]
ATGACCACGATCCTCCTCTGCGACGACCACGTGGTGGTCCGCGCCGGCCTGCTGGCCCTGCTGGGCAGCGAACCCGACAT
CGAGGTCCTCGGCGAAGCGGGCAGCGGCGAGGAGGCGGTCGCGCTGGCCGCGAAGCTCCGGCCCGAGGTGGTGCTGATGG
ACCTCCAGCTGGGGGCCGGCATCGACGGGGTGGAGGCCACCCGCCGCATCACCTCCGCCCCGAACCCCCCGCACGTGCTG
GTCCTGACGACGTACGACACCGACGCGGACATCACCCGGGCCATCGGGGCGGGCGCGACGGGGTACCTCCTCAAGGCGGA
ACGGCCCGAGGAACTCTTCACCGCGATCCACTCGGCGGCAGCCGGCCGCACCACCCTCTCCGCGCCGGTGGCCAGCCGTG
TGATGGCCCGCATGCGGGGGTCACGCCCGACGCTGACGGACCGTGAACTGGACATCCTCGGCCAGCTGGCCCGCGGCCTC
GGCAACCGCGACATCGCCCGGGCCCTGTTCATCAGCGAAGCCACGGTCAAGACCCACCTGGGCCGCATCTACGACAAACT
CGGCGTCGACACCCGCGCGGGAGCCGTCTCGGTAGCCAAGGAACAACGCCTCCTCCCGTCGTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(144-199)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.864

99.517

0.377