Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG861_RS08525 Genome accession   NZ_CP107811
Coordinates   1972179..1972970 (+) Length   263 a.a.
NCBI ID   WP_330261667.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00539     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1967179..1977970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG861_RS08510 (OG861_08520) - 1967670..1968029 (+) 360 WP_330261665.1 MerR family transcriptional regulator -
  OG861_RS08515 (OG861_08525) - 1968157..1971057 (-) 2901 WP_330261666.1 vitamin B12-dependent ribonucleotide reductase -
  OG861_RS08520 (OG861_08530) nrdR 1971193..1971708 (-) 516 WP_329198908.1 transcriptional regulator NrdR -
  OG861_RS08525 (OG861_08535) dinR/lexA 1972179..1972970 (+) 792 WP_330261667.1 transcriptional repressor LexA Regulator
  OG861_RS08530 (OG861_08540) - 1973118..1975088 (-) 1971 WP_330261668.1 ATP-dependent DNA helicase -
  OG861_RS08535 (OG861_08545) - 1975153..1976997 (-) 1845 WP_330261969.1 IucA/IucC family siderophore biosynthesis protein -
  OG861_RS08540 (OG861_08550) - 1977192..1977881 (-) 690 WP_330261669.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 28578.34 Da        Isoelectric Point: 8.0907

>NTDB_id=646505 OG861_RS08525 WP_330261667.1 1972179..1972970(+) (dinR/lexA) [Streptomyces sp. NBC_00539]
MTTTADSATITAQNRSQSRLEPVHAMNDARQNPEAESVRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPP
SMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAEE
SVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNA
AYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 792 bp        

>NTDB_id=646505 OG861_RS08525 WP_330261667.1 1972179..1972970(+) (dinR/lexA) [Streptomyces sp. NBC_00539]
GTGACCACGACCGCAGACAGTGCCACCATCACTGCCCAGAACCGCTCCCAGAGCCGACTTGAGCCGGTGCATGCCATGAA
CGACGCACGTCAGAACCCGGAGGCGGAGTCCGTGCGCCCCGCACGCTCGCTGCCAGGGCGACCTCCAGGCATTCGCGCCG
ACAGCTCCGGGCTCACGGACCGGCAGCGCAGGGTCATCGAGGTCATTCGCGATTCGGTGCAGCGCCGGGGCTACCCGCCG
TCGATGCGCGAGATCGGCCAGGCGGTCGGCCTGTCGAGCACGTCGTCGGTCGCCCACCAGCTGATGGCCCTCGAGCGCAA
GGGGTTCCTGCGGCGCGACCCGCACCGCCCGCGGGCCTACGAGGTGCGCGGCTCGGACCAGCCCAGCTCGCAGCCCACCG
ACACCACCGGCAAGCCCGCCGCCTCCTACGTTCCCCTGGTCGGACGGATCGCCGCCGGCGGCCCGATCCTCGCCGAGGAG
TCGGTGGAGGACGTCTTCCCGCTCCCCCGCCAGCTGGTCGGCGACGGCGAACTCTTCGTCCTCAAGGTCGTCGGTGACTC
GATGATCGAGGCGGCCATCTGCGACGGCGACTGGGTCACCGTCCGCCGTCAGCCCGTCGCGGAGAACGGCGACATCGTCG
CCGCGATGCTGGACGGCGAGGCCACCGTCAAGCGGTTCAAGCGCGAGGACGGCCACGTCTGGCTGCTTCCGCACAACGCC
GCGTACCAGCCCATCCCCGGCGACGAAGCCACCATCCTCGGCAAGGTCGTCGCCGTTCTGCGCCGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(145-257)

LexA DNA binding domain (LexA_DNA_bind)

(56-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

80.608

0.376