Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG861_RS06685 Genome accession   NZ_CP107811
Coordinates   1490558..1491187 (+) Length   209 a.a.
NCBI ID   WP_329199541.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00539     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1485558..1496187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG861_RS06665 (OG861_06675) - 1486565..1487368 (+) 804 WP_190186535.1 IclR family transcriptional regulator -
  OG861_RS06670 (OG861_06680) - 1487444..1488127 (-) 684 WP_329199546.1 ABC transporter ATP-binding protein -
  OG861_RS06675 (OG861_06685) - 1488124..1489209 (-) 1086 WP_329199544.1 ABC transporter permease -
  OG861_RS06680 (OG861_06690) - 1489344..1490558 (+) 1215 WP_330261446.1 sensor histidine kinase -
  OG861_RS06685 (OG861_06695) vraR 1490558..1491187 (+) 630 WP_329199541.1 response regulator transcription factor Regulator
  OG861_RS06690 (OG861_06700) - 1491201..1492688 (-) 1488 WP_329199540.1 PLP-dependent aminotransferase family protein -
  OG861_RS06695 (OG861_06705) - 1492777..1493061 (+) 285 WP_329199538.1 hypothetical protein -
  OG861_RS06700 (OG861_06710) - 1493010..1493639 (+) 630 WP_329199536.1 nucleotidyltransferase family protein -
  OG861_RS06705 (OG861_06715) aceB 1493898..1495526 (+) 1629 WP_329199535.1 malate synthase A -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 21796.16 Da        Isoelectric Point: 7.4035

>NTDB_id=646501 OG861_RS06685 WP_329199541.1 1490558..1491187(+) (vraR) [Streptomyces sp. NBC_00539]
MTIRLLLADDHPVVRAGLRAVLEAEPDFAVAAEAATAERAVELAASAGVDVVLMDLQFGSGMHGSAATALITARPTAPRV
LVLTTYDTDADILAAVEAGASGYLLKDAPPEELAAAVRTAAAGQSALAPAVALRLMDRMRTPAQALTKRELEVLQLVADG
LSNQQISKRLFLSQATVKSHLVHVYAKLGVDSRTAAVAAAAGRRLIRSR

Nucleotide


Download         Length: 630 bp        

>NTDB_id=646501 OG861_RS06685 WP_329199541.1 1490558..1491187(+) (vraR) [Streptomyces sp. NBC_00539]
ATGACGATCCGGCTGCTGCTGGCCGATGACCACCCGGTGGTGCGGGCCGGGCTGCGGGCCGTGCTGGAGGCCGAGCCGGA
CTTCGCGGTGGCCGCGGAGGCGGCCACCGCGGAGCGGGCGGTGGAGCTGGCCGCCTCGGCGGGGGTGGACGTGGTGCTGA
TGGACCTCCAGTTCGGGTCCGGCATGCACGGCTCGGCGGCGACGGCCCTGATCACGGCCCGCCCGACGGCGCCGCGGGTC
CTGGTACTGACCACGTACGACACGGACGCGGACATCCTGGCGGCGGTGGAGGCGGGCGCCTCGGGCTACCTCCTCAAAGA
CGCCCCGCCGGAGGAGCTGGCGGCGGCGGTCCGCACGGCGGCGGCCGGCCAGTCGGCGCTGGCGCCGGCGGTGGCACTGC
GGCTGATGGACCGGATGCGCACGCCCGCGCAGGCCCTCACGAAGCGGGAGCTGGAGGTGCTCCAGCTGGTCGCGGACGGG
CTGTCGAACCAGCAGATCTCCAAGAGGCTCTTCCTCAGCCAGGCCACGGTCAAGTCCCACCTCGTCCACGTCTACGCGAA
GCTCGGCGTCGACTCCCGTACGGCGGCGGTGGCCGCGGCCGCCGGGCGCCGCCTGATCCGCAGCCGGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(145-199)

Response regulator receiver domain (Response_reg)

(6-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.19

100

0.364