Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG861_RS02685 Genome accession   NZ_CP107811
Coordinates   568935..569609 (-) Length   224 a.a.
NCBI ID   WP_330261131.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00539     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 563935..574609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG861_RS02655 (OG861_02655) - 564496..565941 (+) 1446 WP_329200918.1 HAMP domain-containing sensor histidine kinase -
  OG861_RS02660 (OG861_02660) - 566116..566523 (+) 408 WP_329200916.1 hypothetical protein -
  OG861_RS02665 (OG861_02665) - 566520..566726 (+) 207 WP_329200915.1 hypothetical protein -
  OG861_RS02670 (OG861_02670) - 566832..567371 (+) 540 WP_329200913.1 DoxX family membrane protein -
  OG861_RS02675 (OG861_02675) - 567371..568516 (+) 1146 WP_329200911.1 AI-2E family transporter -
  OG861_RS02680 (OG861_02680) - 568519..568821 (-) 303 WP_329200909.1 SHOCT domain-containing protein -
  OG861_RS02685 (OG861_02685) vraR 568935..569609 (-) 675 WP_330261131.1 response regulator transcription factor Regulator
  OG861_RS02690 (OG861_02690) - 569606..570811 (-) 1206 WP_329200906.1 sensor histidine kinase -
  OG861_RS02695 (OG861_02695) - 570908..572113 (-) 1206 WP_330261132.1 serine hydrolase domain-containing protein -
  OG861_RS02700 (OG861_02700) - 572240..573634 (-) 1395 WP_329200902.1 solute carrier family 23 protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 23978.87 Da        Isoelectric Point: 5.1576

>NTDB_id=646494 OG861_RS02685 WP_330261131.1 568935..569609(-) (vraR) [Streptomyces sp. NBC_00539]
MIRVLLADDQQLVRAGFRALLEAQPDIEVTGEAADGAEAVRLVRALTPDIALMDIRMPVLDGLAATRTITADPALASVKV
VMLTTFDLDEYVFEAIRSGASGFLVKDTEPEELLRAVRAVVAGDALLSPGVTRRLIAEFAARSKAPAPAPGAAGLDRLTE
REREVMTLVGMGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLVRPGWLG

Nucleotide


Download         Length: 675 bp        

>NTDB_id=646494 OG861_RS02685 WP_330261131.1 568935..569609(-) (vraR) [Streptomyces sp. NBC_00539]
ATGATCCGCGTCCTGCTCGCCGACGACCAGCAGCTGGTCCGGGCCGGGTTCCGGGCCCTGCTCGAGGCGCAGCCGGACAT
CGAGGTCACGGGCGAGGCCGCCGACGGGGCCGAGGCCGTGCGCCTGGTGCGCGCGCTCACGCCCGACATCGCCCTGATGG
ACATCCGGATGCCCGTGCTCGACGGCCTGGCCGCCACCCGTACGATTACCGCGGACCCGGCCCTGGCCTCGGTGAAGGTG
GTCATGCTGACCACCTTCGACCTGGACGAGTACGTCTTCGAGGCGATCCGCTCCGGCGCGTCCGGCTTCCTCGTCAAGGA
CACCGAACCGGAGGAGCTCCTGCGGGCCGTCCGGGCGGTCGTGGCCGGTGACGCGCTGCTGTCGCCCGGGGTGACGCGCC
GTCTGATCGCGGAGTTCGCGGCGCGGTCCAAGGCGCCCGCGCCGGCCCCGGGCGCCGCGGGGCTGGACCGGCTGACCGAG
CGGGAGCGCGAGGTGATGACGCTGGTGGGGATGGGCCTGTCCAACGAGGAGATCGCCCGACGCCTGGTGGTCAGCCCGCT
CACCGCGAAGACCCACGTCAGCCGGACCATGGTCAAGCTGGGCGCGCGCGACCGGGCACAGCTGGTGGTGCTCGCCTACG
AATCCGGTCTGGTCAGGCCCGGCTGGCTCGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(157-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.156

97.321

0.362