Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   OG266_RS34065 Genome accession   NZ_CP107799
Coordinates   7732417..7734504 (-) Length   695 a.a.
NCBI ID   WP_329548317.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00554 strain NBC 00554     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7727417..7739504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG266_RS34045 (OG266_34025) pgl 7727881..7728663 (-) 783 WP_371550401.1 6-phosphogluconolactonase -
  OG266_RS34050 (OG266_34030) opcA 7728660..7729739 (-) 1080 WP_371550403.1 glucose-6-phosphate dehydrogenase assembly protein OpcA -
  OG266_RS34055 (OG266_34035) zwf 7729736..7731262 (-) 1527 WP_371553052.1 glucose-6-phosphate dehydrogenase -
  OG266_RS34060 (OG266_34040) tal 7731264..7732382 (-) 1119 WP_266465819.1 transaldolase -
  OG266_RS34065 (OG266_34045) recP/tkt 7732417..7734504 (-) 2088 WP_329548317.1 transketolase Machinery gene
  OG266_RS34070 (OG266_34050) - 7734882..7735835 (+) 954 WP_266470780.1 heme o synthase -
  OG266_RS34075 (OG266_34055) - 7735928..7736284 (+) 357 WP_266465825.1 hypothetical protein -
  OG266_RS34080 (OG266_34060) - 7736488..7737594 (+) 1107 WP_329548318.1 amidohydrolase family protein -
  OG266_RS34085 (OG266_34065) - 7737614..7738387 (+) 774 Protein_6737 nucleotidyltransferase domain-containing protein -
  OG266_RS34090 (OG266_34070) - 7738374..7739381 (-) 1008 WP_266465841.1 heme A synthase -

Sequence

Protein


Download         Length: 695 a.a.        Molecular weight: 74663.36 Da        Isoelectric Point: 4.8735

>NTDB_id=646468 OG266_RS34065 WP_329548317.1 7732417..7734504(-) (recP/tkt) [Streptomyces sp. NBC_00554 strain NBC 00554]
MSTKPTTTDLEWTELDQRAVDTARVLAADAVQKVGNGHPGTAMSLAPAAYTLFQKVMRHDPADPDWTGRDRFVLSAGHSS
LTLYTQLYLAGFGLELDDLKAFRTWGSRTPGHPEYGHTPGVETTTGPLGQGVANAVGMAMASRYERGLFDPDAPQGESPF
DHFIFAIAGDGCLQEGISAEASSMAGHQELGNLILLWDDNHISIEGDTETAVSEDTVKRYEAYGWHVQRIAPKPDGDLDP
HAIYNAIEAAKLVTDKPSFIAMRSIIAWPAPNAQNTEAAHGSALGDDEVAATKRVLGFDPEQSFEVAEEVLAHTRGALDR
GREAKGEWEKGFAAWRTASPERAAEFDRIAAGELPAGWESQLPVFEAGKGVATRAASGKVLQALGAVIPELWGGSADLAG
SNNTTIDKTSSFLPADNPLPEANPYGRTIHFGIREHSMAAEMNGIALHGNTRIYGGTFLVFSDYMRNAVRLSALMHAPVT
YVWTHDSIGLGEDGPTHQPVEHLASLRAIPGLNVVRPADANETTIAWREVLKRYTKVFGKGAPHGLALTRQGVPTYEANE
DAAKGGYVLFEAEGGSPEVILIGTGSEVHVAVEAREQLQAEGIPTRVVSMPCVEWFDEQDQGYRDSVLPPSVKARVSVEA
GIGLTWHRFVGDAGRIVSLEHFGASADGKVLFREFGFTAENVASAARESIAAAQR

Nucleotide


Download         Length: 2088 bp        

>NTDB_id=646468 OG266_RS34065 WP_329548317.1 7732417..7734504(-) (recP/tkt) [Streptomyces sp. NBC_00554 strain NBC 00554]
GTGAGCACCAAGCCGACCACCACAGACCTCGAGTGGACCGAGTTGGACCAGCGGGCTGTGGACACCGCCCGCGTCCTGGC
CGCCGATGCCGTACAGAAGGTCGGTAACGGCCATCCCGGTACGGCGATGAGCCTGGCGCCCGCCGCGTACACCCTCTTCC
AGAAGGTGATGCGGCACGACCCGGCGGACCCCGACTGGACCGGACGCGACCGTTTCGTGCTGTCCGCGGGCCACTCGTCC
CTGACCCTCTACACCCAGCTCTACCTGGCCGGTTTCGGCCTGGAGCTGGACGATCTCAAGGCCTTCAGGACGTGGGGCAG
CAGGACGCCCGGCCACCCCGAGTACGGGCACACCCCCGGCGTGGAGACGACGACGGGGCCGCTCGGCCAGGGTGTCGCCA
ACGCGGTGGGCATGGCGATGGCCAGCCGTTACGAGCGCGGCCTGTTCGATCCGGACGCCCCCCAGGGTGAGTCCCCGTTC
GACCACTTCATCTTCGCGATCGCCGGTGACGGCTGCCTCCAGGAGGGCATCTCCGCCGAGGCGTCCTCGATGGCCGGTCA
CCAGGAGCTCGGCAACCTGATCCTGCTGTGGGACGACAACCACATCTCGATCGAGGGCGACACGGAGACGGCCGTCTCCG
AGGACACCGTCAAGCGGTACGAGGCGTACGGCTGGCATGTGCAGCGGATCGCCCCGAAGCCGGACGGCGACCTCGACCCG
CACGCCATCTACAACGCCATCGAGGCCGCGAAGCTGGTGACGGACAAGCCCTCCTTCATCGCGATGCGCTCGATCATCGC
CTGGCCCGCCCCGAACGCGCAGAACACCGAGGCCGCGCACGGCTCGGCGCTCGGCGACGACGAGGTCGCGGCCACCAAGC
GCGTGCTCGGCTTCGACCCGGAGCAGAGCTTCGAGGTCGCCGAGGAGGTCCTCGCGCACACCCGCGGGGCCCTGGACCGC
GGCCGTGAGGCCAAGGGTGAGTGGGAGAAGGGCTTCGCGGCCTGGCGTACGGCCAGCCCGGAGCGTGCCGCCGAGTTCGA
CCGCATCGCCGCCGGTGAGCTGCCCGCGGGCTGGGAGTCGCAGCTTCCGGTGTTCGAGGCGGGCAAGGGTGTCGCCACCC
GTGCCGCGTCCGGCAAGGTCCTCCAGGCCCTCGGTGCGGTCATCCCCGAGCTCTGGGGCGGCTCCGCCGACCTCGCAGGA
TCGAACAACACGACCATCGACAAGACGAGCTCCTTCCTGCCGGCGGACAACCCGCTGCCGGAGGCGAACCCGTACGGCCG
CACGATCCACTTCGGTATCCGCGAGCACTCGATGGCCGCCGAGATGAACGGCATCGCGCTGCACGGCAACACCCGCATCT
ACGGCGGCACCTTCCTGGTGTTCTCCGACTACATGCGCAACGCGGTGCGGCTGTCGGCCCTCATGCACGCTCCGGTGACG
TACGTGTGGACGCACGACTCGATCGGCCTCGGCGAGGACGGCCCGACCCACCAGCCGGTCGAGCACCTGGCCTCGCTGCG
CGCGATCCCCGGTCTGAACGTCGTCCGTCCCGCGGACGCCAACGAGACCACGATCGCCTGGCGCGAGGTCCTCAAGCGCT
ACACCAAGGTGTTCGGCAAGGGTGCCCCGCACGGCCTCGCGCTGACCCGCCAGGGTGTACCGACGTACGAGGCCAACGAA
GATGCCGCCAAGGGCGGTTACGTGCTGTTCGAGGCCGAGGGCGGCTCGCCCGAGGTCATCCTCATCGGCACCGGCTCCGA
GGTGCACGTCGCCGTCGAGGCGCGTGAGCAGCTCCAGGCCGAGGGCATCCCGACTCGGGTCGTGTCCATGCCGTGCGTGG
AGTGGTTCGACGAGCAGGACCAGGGGTACCGGGACAGCGTGCTGCCGCCTTCGGTGAAGGCGCGGGTTTCGGTCGAGGCC
GGTATCGGTCTCACCTGGCACCGGTTCGTCGGGGACGCGGGACGCATTGTTTCGCTGGAGCACTTCGGTGCTTCTGCCGA
TGGCAAGGTGCTCTTCCGCGAGTTCGGTTTCACTGCCGAGAACGTCGCATCCGCCGCCCGGGAATCGATCGCCGCAGCCC
AGCGCTGA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(370-533)

Transketolase, C-terminal domain (Transketolase_C)

(576-682)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(16-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

44.985

97.554

0.439