Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG266_RS30355 Genome accession   NZ_CP107799
Coordinates   6880784..6882517 (-) Length   577 a.a.
NCBI ID   WP_266464318.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00554 strain NBC 00554     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6875784..6887517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG266_RS30345 (OG266_30330) - 6877292..6878608 (+) 1317 WP_371549458.1 RNA polymerase sigma factor -
  OG266_RS30350 (OG266_30335) rcrQ 6878856..6880784 (-) 1929 WP_371549460.1 ABC transporter ATP-binding protein Regulator
  OG266_RS30355 (OG266_30340) rcrP 6880784..6882517 (-) 1734 WP_266464318.1 ABC transporter ATP-binding protein Regulator
  OG266_RS30360 (OG266_30345) - 6882668..6884122 (-) 1455 WP_371549461.1 FGGY family carbohydrate kinase -
  OG266_RS30365 (OG266_30350) - 6884209..6884514 (-) 306 WP_266462868.1 YtxH domain-containing protein -
  OG266_RS30385 (OG266_30370) - 6885106..6886332 (-) 1227 WP_371549463.1 MFS transporter -
  OG266_RS30390 (OG266_30375) - 6886387..6887142 (+) 756 WP_371549465.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62520.75 Da        Isoelectric Point: 6.5101

>NTDB_id=646462 OG266_RS30355 WP_266464318.1 6880784..6882517(-) (rcrP) [Streptomyces sp. NBC_00554 strain NBC 00554]
MLIRLLRTYLRPYKKPIALLVLLQLLQTCATLYLPTLNAHIIDNGVVKGDTGYILSFGAVMIAISLAQVVCNIGAVYYGA
RTASAVGRDIRGAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIVLALGLDVPLSGV
LVAVVPVLGLGVTLIIRRLRPLFRSMQVRLDTVNRVLREQITGNRVIRAFVRDDYEKERFRKANADLTEVSLGTGRYLAL
MFPMVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTDSSVVP
PTAPVVELRRHGHLEIRGGGFRYPGAEEPVLTAVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVDVA
TIEPRLLAKTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKGFVEGLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYKTDAMLRAALAAETAEATVVIVAQRVSTIRDADRIVVLDEGRVVGTGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=646462 OG266_RS30355 WP_266464318.1 6880784..6882517(-) (rcrP) [Streptomyces sp. NBC_00554 strain NBC 00554]
GTGCTCATACGACTACTTCGTACGTACCTCCGTCCGTACAAGAAACCCATCGCCCTGCTGGTGCTGCTGCAGCTCCTGCA
GACCTGCGCCACGCTCTACCTGCCCACGCTCAACGCGCACATCATTGACAACGGCGTCGTGAAGGGCGACACGGGATACA
TCCTGTCCTTCGGCGCAGTCATGATCGCGATCTCGCTGGCGCAGGTCGTCTGCAACATCGGCGCCGTCTACTACGGCGCC
CGTACGGCTTCGGCCGTCGGCCGGGACATCCGGGGCGCCGTCTTCGACCGCGTCCAGTCCTTCTCCGCGCGCGAGGTCGG
CCACTTCGGGGCGCCCTCGCTGATCACCCGCACCACCAATGACGTCCAGCAGGTGCAGATGCTCGCCCTGATGACGTTCA
CCCTGCTGGTGTCGGCGCCGATCATGTGTGTGGGCGGCATCGTGCTGGCCCTCGGCCTTGACGTGCCGCTGTCCGGGGTG
CTGGTCGCCGTGGTGCCGGTACTCGGCCTCGGTGTGACCCTGATCATCCGGCGGCTGCGGCCGCTGTTCCGCTCCATGCA
GGTCCGCCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCCTTCGTACGGGACG
ACTACGAGAAGGAGCGCTTCCGGAAGGCGAACGCCGATCTGACCGAGGTGTCGCTGGGCACCGGGCGGTACCTGGCACTG
ATGTTCCCGATGGTCATGACCGTCGTGAACCTGTCCTCGATCGCCGTGGTGTGGTTCGGCGCGCACCGGATCGACAGCGG
GGGCATGCAGATCGGTGATCTGACCGCGTTCCTCGCCTACCTCATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGTGCCGAGCGCATCCAGGAGGTCCTGGACACCGACAGCAGTGTGGTGCCG
CCGACCGCACCCGTCGTGGAGCTGCGGCGCCACGGCCACCTGGAGATCCGTGGCGGCGGGTTCCGTTACCCGGGTGCCGA
GGAGCCGGTGCTGACGGCCGTCGACCTGGTGGCGCGGCCGGGTGAGACGACCGCCGTGATCGGGTCCACGGGCAGTGGCA
AGTCGACGCTTCTCGGGCTCGTCCCCCGGCTGTTCGACGCCACGGACGGCGAGGTGCTCGTCGACGGCGTGGACGTGGCG
ACCATCGAGCCGAGACTGCTGGCCAAGACGGTCGGACTCGTCCCGCAGAAGCCGTATCTCTTCGCGGGCACGGTGGCGAC
GAACCTGCGGTACGGCAACCCGGACGCCACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGGTTCG
TGGAGGGCCTGGAGAACGGGCTCGACTCCCCCATCGCACAGGGCGGCACGAATGTGTCCGGTGGTCAGCGGCAGCGTCTC
GCGATCGCCCGCACCCTCGTACAGCGCCCGGAGATCTACCTCTTCGACGACTCGTTCTCGGCGCTCGACTACAAGACCGA
CGCCATGCTGCGCGCGGCGCTCGCCGCCGAGACCGCCGAGGCGACCGTGGTGATCGTCGCCCAGCGGGTGTCGACCATCC
GGGACGCCGACCGGATCGTGGTCCTCGACGAGGGCCGGGTCGTCGGCACCGGGCGGCACCACGAACTGATGGCGGGCAAC
GAGACATACCGGGAGATCGTCCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.034

100

0.404