Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG266_RS30350 Genome accession   NZ_CP107799
Coordinates   6878856..6880784 (-) Length   642 a.a.
NCBI ID   WP_371549460.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00554 strain NBC 00554     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6873856..6885784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG266_RS30340 (OG266_30325) dnaG 6875148..6877055 (+) 1908 WP_326723274.1 DNA primase -
  OG266_RS30345 (OG266_30330) - 6877292..6878608 (+) 1317 WP_371549458.1 RNA polymerase sigma factor -
  OG266_RS30350 (OG266_30335) rcrQ 6878856..6880784 (-) 1929 WP_371549460.1 ABC transporter ATP-binding protein Regulator
  OG266_RS30355 (OG266_30340) rcrP 6880784..6882517 (-) 1734 WP_266464318.1 ABC transporter ATP-binding protein Regulator
  OG266_RS30360 (OG266_30345) - 6882668..6884122 (-) 1455 WP_371549461.1 FGGY family carbohydrate kinase -
  OG266_RS30365 (OG266_30350) - 6884209..6884514 (-) 306 WP_266462868.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69349.65 Da        Isoelectric Point: 5.3011

>NTDB_id=646461 OG266_RS30350 WP_371549460.1 6878856..6880784(-) (rcrQ) [Streptomyces sp. NBC_00554 strain NBC 00554]
MAGPMGRMMAGGGPDQRSMDFKGSGKRLLSQFKPERGTMYAMLSLGVVSVALSVLGPKILGRATDLVFAGIIGREMPAGQ
TKAEALEAMRARGDGGTADMLSGTDFTPGKGIDFGAVGNVLLLALCAFVVAGVLMAVSTRLSNRAINMTVYRMREDLQAK
LSRLPLSYFDKRQRGEVLSRATNDIDNIQQTLQQSMGQLVNSLLTIVGVLAMMFWVSPLLALVALITVPLSFFIATRVGK
RSQPHFVQQWRTTGKLNAHVEEMYTGHNLVKVFGRQDESAAQFAEQNEQLYEAGFKAQFNSGIMQPLMMFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDADEQEADPVPALRPDELRGRVALE
NVSFRYDPDKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDIAAMSRDELRDGIGMVLQDT
WLFGGTIAENIAYGASRDVTRGEIEEASRAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADAILVMENGSIVEQGAHAELLAADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=646461 OG266_RS30350 WP_371549460.1 6878856..6880784(-) (rcrQ) [Streptomyces sp. NBC_00554 strain NBC 00554]
ATGGCCGGGCCTATGGGGCGGATGATGGCCGGGGGCGGCCCCGATCAGCGCTCGATGGATTTCAAGGGGTCGGGCAAACG
GCTCCTCTCCCAGTTCAAGCCCGAGCGCGGCACGATGTACGCGATGCTCTCCCTCGGTGTGGTCAGCGTGGCGCTGTCCG
TGCTGGGCCCGAAGATCCTGGGCAGGGCGACCGACCTGGTCTTCGCCGGGATCATCGGACGGGAGATGCCCGCCGGCCAG
ACGAAGGCCGAGGCCCTCGAGGCGATGCGGGCACGCGGCGACGGCGGCACGGCCGACATGCTCTCGGGCACGGACTTCAC
TCCGGGCAAGGGCATCGACTTCGGCGCCGTCGGGAACGTACTGCTGCTCGCGCTCTGTGCGTTCGTGGTGGCCGGTGTGC
TGATGGCGGTGTCCACCCGGCTCTCGAACCGGGCGATCAACATGACCGTCTACCGGATGCGCGAGGACCTGCAGGCCAAG
CTGTCCCGCCTGCCGCTTTCCTACTTCGACAAGCGGCAGCGCGGTGAGGTCCTCAGCCGCGCCACGAACGACATCGACAA
CATCCAGCAGACCCTCCAGCAGTCGATGGGCCAGCTGGTCAACTCCCTCCTCACCATCGTGGGCGTGCTCGCGATGATGT
TCTGGGTCTCGCCGCTCCTCGCCCTGGTGGCGCTGATCACCGTGCCGCTGTCCTTCTTCATCGCCACGCGGGTCGGCAAG
CGGTCGCAGCCGCACTTCGTCCAGCAGTGGCGGACCACCGGCAAGCTCAACGCGCACGTCGAGGAGATGTACACCGGGCA
CAACCTGGTGAAGGTGTTCGGGCGGCAGGACGAGTCGGCGGCGCAGTTCGCCGAGCAGAACGAGCAGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTTTCGAACCTGAACTATGTGCTGGTGGCG
GTGGTGGGCGGGCTGCGGGTCGCGTCCGGGTCGCTGTCGATCGGTGACGTGCAGGCGTTCATCCAGTACTCCCGGCAGTT
CTCCATGCCGCTGACCCAGGTCGCTTCCATGGCGAACCTCGTGCAGTCGGGCGTGGCATCCGCCGAGCGGATCTTCGAGC
TGCTCGACGCGGACGAGCAGGAGGCCGATCCGGTTCCGGCGCTCCGTCCCGACGAGCTGCGGGGGCGGGTGGCGCTGGAG
AACGTGTCCTTCCGGTACGACCCCGACAAGCCGCTCATCGAGGATCTGTCGCTGAAGGTGGAGCCCGGGCACACGGTCGC
GATCGTCGGCCCGACGGGCGCCGGCAAGACCACGCTGGTCAACCTCCTCATGCGGTTCTACGAGGTCACCGGGGGGCGGA
TCACTCTCGACGGGGTCGACATCGCCGCCATGTCCCGGGACGAACTCCGGGACGGCATCGGGATGGTGCTCCAGGACACC
TGGCTGTTCGGGGGGACGATCGCGGAGAACATCGCGTACGGGGCCTCGCGGGACGTCACCCGGGGGGAGATCGAGGAAGC
CTCGCGGGCCGCCCACGCCGACCGGTTCATCCGGACGCTGCCCGACGGGTACGACACCGTGATCGACGACGAGGGGACGG
GGGTGAGCGCGGGTGAGAAGCAGCTCATCACCATCGCTCGGGCGTTCCTGTCGGATCCGGTGATTCTGGTCCTTGACGAG
GCGACGTCTTCGGTCGACACCCGGACGGAGGTCCTGATCCAGAAGGCGATGGCGAAGCTTGCGCACGGGCGTACGTCGTT
CGTGATCGCGCATCGCCTGTCGACGATCCGGGATGCGGACGCGATCCTCGTGATGGAGAACGGGTCGATCGTGGAACAGG
GCGCGCACGCCGAGCTGCTTGCCGCGGACGGGGCGTACGCGCGCCTGTACAAGGCCCAGTTCGCACAGGCGGTGGCTGAG
GTGGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(44-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.097

96.573

0.407