Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG266_RS29890 Genome accession   NZ_CP107799
Coordinates   6779331..6779993 (+) Length   220 a.a.
NCBI ID   WP_371549340.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00554 strain NBC 00554     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6774331..6784993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG266_RS29875 (OG266_29860) - 6774940..6775635 (+) 696 WP_266462621.1 TerB family tellurite resistance protein -
  OG266_RS29880 (OG266_29865) - 6775784..6777913 (+) 2130 WP_371549336.1 MMPL family transporter -
  OG266_RS29885 (OG266_29870) - 6778000..6779334 (+) 1335 WP_371549338.1 sensor histidine kinase -
  OG266_RS29890 (OG266_29875) vraR 6779331..6779993 (+) 663 WP_371549340.1 response regulator Regulator
  OG266_RS29895 (OG266_29880) - 6780212..6781426 (+) 1215 WP_371549342.1 exo-alpha-sialidase -
  OG266_RS29900 (OG266_29885) - 6781701..6782636 (-) 936 WP_371549344.1 dihydrodipicolinate synthase family protein -
  OG266_RS29905 (OG266_29890) - 6782636..6783697 (-) 1062 WP_371553011.1 oligopeptide/dipeptide ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23136.71 Da        Isoelectric Point: 5.1113

>NTDB_id=646460 OG266_RS29890 WP_371549340.1 6779331..6779993(+) (vraR) [Streptomyces sp. NBC_00554 strain NBC 00554]
MTIRVVLADDQTLVRAAFAMLVESARDMAVVGQAATGREAVELARSARADLIVMDIRMPDLDGIEATRLIAADADLAGVR
VLVLTTYDTDEHIAEALRAGASGFLVKDTRPAELLDAIRTVAAGESLLSPGPTARLIARFLRSPSAPATGGPECLSERER
QVLTLVARGLNNTEIAEALGLSPLTAKTHVSRIMGKLGARDRAQLVIVAYESGLVAPGAC

Nucleotide


Download         Length: 663 bp        

>NTDB_id=646460 OG266_RS29890 WP_371549340.1 6779331..6779993(+) (vraR) [Streptomyces sp. NBC_00554 strain NBC 00554]
ATGACCATCCGTGTAGTCCTCGCCGATGACCAGACCCTCGTGCGGGCCGCGTTCGCGATGCTCGTCGAGTCGGCGCGGGA
CATGGCGGTCGTCGGGCAGGCAGCCACCGGCCGGGAAGCGGTGGAGCTGGCCCGCAGCGCACGGGCGGATCTGATCGTCA
TGGACATCCGCATGCCCGACCTGGACGGCATCGAGGCAACCCGGCTCATCGCCGCCGACGCGGACCTGGCCGGCGTCAGG
GTCCTGGTCCTGACCACGTACGACACCGACGAGCACATCGCGGAGGCCCTGCGCGCGGGCGCCTCCGGCTTCCTGGTGAA
GGACACCAGGCCCGCCGAACTCCTCGACGCGATCCGCACGGTGGCAGCCGGTGAGTCCCTGCTCTCGCCGGGCCCGACCG
CCCGGCTGATCGCCCGCTTCCTGCGCAGCCCTTCGGCCCCCGCGACGGGCGGCCCCGAGTGCCTCTCCGAGCGCGAGCGC
CAAGTGCTGACGCTGGTCGCCCGCGGCCTCAACAACACCGAGATAGCAGAGGCGTTGGGGCTGAGCCCACTCACCGCGAA
GACCCACGTGAGCCGCATCATGGGCAAGCTGGGTGCCCGTGACCGGGCCCAGCTGGTGATCGTGGCGTACGAGTCGGGGC
TCGTCGCGCCGGGCGCTTGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-209)

Response regulator receiver domain (Response_reg)

(5-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.674

97.727

0.368