Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG266_RS19830 Genome accession   NZ_CP107799
Coordinates   4550484..4550699 (+) Length   71 a.a.
NCBI ID   WP_266457219.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00554 strain NBC 00554     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4545484..4555699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG266_RS19810 (OG266_19810) - 4546385..4546987 (-) 603 WP_371547425.1 carbonic anhydrase -
  OG266_RS19815 (OG266_19815) - 4547132..4547794 (-) 663 WP_371547427.1 response regulator transcription factor -
  OG266_RS19820 (OG266_19820) - 4547694..4549220 (-) 1527 WP_371547431.1 ATP-binding protein -
  OG266_RS19825 (OG266_19825) - 4550179..4550487 (+) 309 WP_371547434.1 hypothetical protein -
  OG266_RS19830 (OG266_19830) dinR/lexA 4550484..4550699 (+) 216 WP_266457219.1 MarR family transcriptional regulator Regulator
  OG266_RS19835 (OG266_19835) - 4550809..4551660 (+) 852 WP_371547439.1 hypothetical protein -
  OG266_RS19840 (OG266_19840) - 4551724..4552272 (+) 549 WP_371547442.1 pentapeptide repeat-containing protein -
  OG266_RS19845 (OG266_19845) - 4552269..4552514 (+) 246 WP_371547444.1 hypothetical protein -
  OG266_RS19855 (OG266_19855) - 4553122..4554750 (-) 1629 WP_371547447.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 71 a.a.        Molecular weight: 8220.48 Da        Isoelectric Point: 11.5890

>NTDB_id=646439 OG266_RS19830 WP_266457219.1 4550484..4550699(+) (dinR/lexA) [Streptomyces sp. NBC_00554 strain NBC 00554]
MIYPLTDRQERILRCIREWIAEHGEAPSIREIGKQVGLSSPSSVLHQLNQLEKRGLLSRERRASRASRLAR

Nucleotide


Download         Length: 216 bp        

>NTDB_id=646439 OG266_RS19830 WP_266457219.1 4550484..4550699(+) (dinR/lexA) [Streptomyces sp. NBC_00554 strain NBC 00554]
ATGATCTACCCCCTCACCGACCGCCAAGAGCGCATCCTCCGGTGCATACGGGAGTGGATCGCCGAACACGGCGAGGCCCC
GAGCATCCGCGAGATCGGGAAGCAGGTCGGGCTGAGCAGCCCGTCATCGGTGCTCCACCAGCTCAACCAGCTTGAGAAGC
GCGGACTCCTCTCCCGCGAGCGGCGTGCCTCGCGCGCGAGCCGGCTCGCCCGCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(4-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.161

87.324

0.394