Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   OG266_RS12380 Genome accession   NZ_CP107799
Coordinates   2864177..2866396 (-) Length   739 a.a.
NCBI ID   WP_266474648.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00554 strain NBC 00554     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2859177..2871396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG266_RS12350 (OG266_12340) rnc 2859977..2860816 (-) 840 WP_266474644.1 ribonuclease III -
  OG266_RS12355 (OG266_12345) rpmF 2860836..2861009 (-) 174 WP_033321093.1 50S ribosomal protein L32 -
  OG266_RS12360 (OG266_12350) - 2861012..2861665 (-) 654 WP_266474645.1 DUF177 domain-containing protein -
  OG266_RS12365 (OG266_12355) - 2861791..2862867 (-) 1077 WP_371545500.1 cell division initiation protein -
  OG266_RS12370 (OG266_12360) coaD 2862978..2863457 (-) 480 WP_266475064.1 pantetheine-phosphate adenylyltransferase -
  OG266_RS12375 (OG266_12365) rsmD 2863484..2864071 (-) 588 WP_266474647.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  OG266_RS12380 (OG266_12370) recG 2864177..2866396 (-) 2220 WP_266474648.1 ATP-dependent DNA helicase RecG Machinery gene
  OG266_RS12385 (OG266_12375) - 2866560..2868398 (+) 1839 WP_371545502.1 HSP90 family protein -
  OG266_RS12390 (OG266_12380) - 2868395..2871382 (+) 2988 WP_371545504.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 739 a.a.        Molecular weight: 80221.68 Da        Isoelectric Point: 6.0398

>NTDB_id=646415 OG266_RS12380 WP_266474648.1 2864177..2866396(-) (recG) [Streptomyces sp. NBC_00554 strain NBC 00554]
MDLVSALEEPLKNALGPATAKVMAEHLGLHTVGDLLHHYPRRYEERGQLTHLADLPMDEHVTVVAQVADARLHTFASSKA
PRGKGQRLEVTITDGSGRLQLVFFGHGVHKPHKELLPGTRAMFSGKVSVFNHRLQLAHPAYELLRGDDDEATETVGSWAG
ALIPLYPATAKLESWKIAKSVQTVLPNAQEAVDPLPDSLRDGRGLVTLPEALLKIHRPQTKADVLDARARLKWDEAFVLQ
VALARRRYADAQLPAVAREPKPAGLLTAFDAKLPFTLTEGQQKVSKEIFDDLATEHPMHRLLQGEVGSGKTMVALRAMLA
VVDSGGQAAMLAPTEVLAQQHHRSITEMMGELAEGGMLGGVEHSTKIVLLTGSMGTAARRKALLDLVTGEAGIVIGTHAL
IEDKVQFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIATHVVP
AADKPHFLSRAWERVREEVENGHQAYVVCPRIGDDEDDPAKARSKKKSPEDEAEKRPPLAVLDIADQLANGALQGLKVEV
LHGRMQPDDKDAVMRRFSAGETDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVSEMPE
ASPARQRLNAVASTLDGFELSRIDLEQRREGDVLGQAQSGVRSSLRMLAVIEDEDIIAEAREEATTVVAADPELEGLPGL
RTALQALLDEEREQYLDKG

Nucleotide


Download         Length: 2220 bp        

>NTDB_id=646415 OG266_RS12380 WP_266474648.1 2864177..2866396(-) (recG) [Streptomyces sp. NBC_00554 strain NBC 00554]
ATGGATCTCGTGTCCGCGCTCGAAGAACCACTGAAAAATGCGCTCGGTCCCGCCACCGCGAAGGTGATGGCCGAGCACCT
TGGCCTGCACACCGTCGGTGATCTGCTGCACCACTATCCCCGCAGATACGAGGAGCGCGGCCAGCTCACCCACCTCGCCG
ACCTGCCCATGGACGAGCATGTGACGGTGGTCGCCCAGGTCGCCGACGCGCGCCTGCACACCTTCGCCTCGTCGAAGGCG
CCCCGCGGCAAGGGCCAGCGCCTCGAAGTGACCATCACGGACGGCAGCGGCCGCCTCCAGCTGGTCTTCTTCGGCCACGG
CGTGCACAAGCCCCACAAGGAGCTGCTGCCCGGCACGCGCGCGATGTTCTCCGGCAAGGTCTCCGTCTTCAACCACCGCC
TGCAGCTGGCCCATCCGGCGTACGAGTTGCTGCGCGGCGACGACGACGAGGCGACCGAGACCGTCGGCTCCTGGGCAGGT
GCCCTCATTCCGCTCTACCCGGCCACCGCCAAGCTGGAGTCCTGGAAGATCGCCAAGTCCGTGCAGACGGTCCTGCCGAA
CGCCCAGGAGGCCGTGGACCCGCTCCCGGACTCGCTGCGGGACGGCCGTGGCCTCGTCACTCTCCCCGAGGCACTCCTGA
AGATCCACCGTCCGCAGACCAAGGCGGACGTCCTCGACGCCCGCGCCCGGCTCAAGTGGGACGAGGCCTTCGTCCTCCAG
GTCGCGCTGGCCCGCCGCCGGTACGCCGACGCCCAACTCCCCGCCGTGGCCCGCGAACCCAAGCCGGCCGGCCTCCTCAC
CGCCTTCGACGCCAAGCTCCCCTTCACCCTCACCGAGGGCCAGCAGAAGGTCTCCAAGGAGATCTTCGACGACCTCGCGA
CCGAGCATCCGATGCACCGGCTGCTCCAGGGAGAGGTCGGTTCCGGCAAGACGATGGTGGCCCTGCGCGCCATGCTCGCC
GTCGTCGACTCGGGCGGGCAGGCCGCCATGCTCGCGCCCACCGAAGTCCTCGCCCAGCAGCACCACCGTTCGATCACGGA
GATGATGGGCGAGCTGGCCGAGGGCGGGATGCTCGGAGGGGTCGAGCACTCCACGAAGATCGTGCTGCTCACGGGGTCCA
TGGGGACCGCCGCCCGGCGGAAGGCGCTGCTCGACCTCGTCACGGGTGAGGCCGGGATCGTCATCGGCACGCATGCGCTG
ATCGAGGACAAGGTGCAGTTCCACGACCTGGGCCTGGTCGTGGTCGACGAGCAGCACCGCTTCGGTGTCGAGCAGCGCGA
CGCCCTGCGCGGCAAGGGCAAGCAGCCGCCGCACCTGCTGGTCATGACCGCCACACCCATCCCGCGCACCGTCGCGATGA
CCGTCTTCGGCGACCTGGAGACCTCGGTCCTCGACCAGCTCCCCGCCGGGCGCTCACCGATCGCCACCCATGTCGTCCCC
GCCGCCGACAAGCCGCACTTCCTGTCGCGCGCGTGGGAGCGCGTGCGCGAGGAAGTGGAGAACGGCCATCAGGCGTACGT
CGTCTGCCCCCGCATCGGCGACGACGAGGACGATCCGGCCAAGGCCAGGAGCAAGAAGAAGTCGCCGGAGGACGAGGCCG
AGAAGCGCCCGCCGCTCGCCGTCCTCGACATCGCCGACCAACTGGCCAACGGCGCCCTCCAAGGGCTCAAGGTCGAAGTC
CTGCACGGCAGGATGCAGCCCGACGACAAGGACGCCGTCATGCGCCGCTTCTCCGCGGGCGAGACCGACGTCCTGGTCGC
GACGACCGTGATCGAGGTCGGGGTGAACGTGCCGAACGCCACAGCGATGGTGATCATGGACGCCGACCGGTTCGGCGTAT
CGCAGCTCCACCAGCTCCGCGGCCGTGTCGGCCGTGGCTCGGCCCCCGGCCTGTGCCTCCTGGTCAGCGAGATGCCGGAG
GCGAGCCCGGCACGCCAGCGGCTGAACGCGGTGGCGTCCACACTCGACGGCTTCGAACTCTCCCGCATCGACCTCGAACA
GCGCCGCGAGGGCGATGTCCTCGGCCAGGCCCAGTCCGGCGTCCGCTCCTCGCTGCGCATGCTGGCCGTCATCGAGGACG
AGGACATCATCGCGGAGGCCCGCGAGGAGGCCACCACGGTCGTCGCCGCCGACCCGGAGCTCGAGGGGCTTCCCGGCCTG
CGTACGGCTCTCCAGGCTCTGCTCGACGAGGAGAGGGAGCAGTACCTGGACAAGGGCTGA

Domains

Predicted by InterProScan.

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(61-144)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(654-715)

DEAD/DEAH box helicase (DEAD)

(298-451)

Helicase conserved C-terminal domain (Helicase_C)

(551-626)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

39.031

94.993

0.371