Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG266_RS12305 Genome accession   NZ_CP107799
Coordinates   2848563..2849759 (-) Length   398 a.a.
NCBI ID   WP_266474629.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00554 strain NBC 00554     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2843563..2854759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG266_RS12285 (OG266_12275) - 2843867..2844205 (-) 339 WP_164411711.1 P-II family nitrogen regulator -
  OG266_RS12290 (OG266_12280) - 2844202..2845539 (-) 1338 WP_266474626.1 ammonium transporter -
  OG266_RS12295 (OG266_12285) - 2845879..2847351 (-) 1473 WP_371545486.1 hypothetical protein -
  OG266_RS12300 (OG266_12290) - 2847799..2848461 (+) 663 WP_371545488.1 bifunctional DNA primase/polymerase -
  OG266_RS12305 (OG266_12295) pilA 2848563..2849759 (-) 1197 WP_266474629.1 signal recognition particle-docking protein FtsY Machinery gene
  OG266_RS12310 (OG266_12300) - 2849951..2850922 (+) 972 WP_266474630.1 LLM class flavin-dependent oxidoreductase -
  OG266_RS12315 (OG266_12305) - 2851063..2852478 (-) 1416 WP_371545491.1 sugar porter family MFS transporter -

Sequence

Protein


Download         Length: 398 a.a.        Molecular weight: 42242.44 Da        Isoelectric Point: 4.4518

>NTDB_id=646414 OG266_RS12305 WP_266474629.1 2848563..2849759(-) (pilA) [Streptomyces sp. NBC_00554 strain NBC 00554]
MEIVILAVVIAVVVIGALGGLVVGSRKRKLPPPPPVAPDITAPPAEPHVGDEAETPREEPRRTIEEVDLPEAASAPVAVE
EPPALPEIEVPEPSAGRLVRLRARLSRSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVQPTQELVDRLRERVKV
LGTRTPDELRALLREELLQLLVPEFDRTVKTDSNLDTPGIVMVVGVNGTGKTTTTGKLARVLVADGKHVLLGAADTFRAA
AADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEGIEEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHAPLDEILL
VLDATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLVGLGEGADDLAPFEPEAFVDALIGE

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=646414 OG266_RS12305 WP_266474629.1 2848563..2849759(-) (pilA) [Streptomyces sp. NBC_00554 strain NBC 00554]
ATGGAAATCGTCATCCTTGCTGTAGTCATCGCCGTCGTCGTGATCGGCGCGCTCGGCGGGCTGGTCGTCGGCAGTCGCAA
GCGGAAGCTGCCTCCGCCGCCCCCCGTCGCCCCCGACATCACCGCCCCTCCGGCCGAGCCGCACGTCGGCGACGAGGCCG
AGACGCCGCGGGAAGAACCGCGCCGCACGATAGAAGAGGTGGACCTCCCGGAGGCCGCCTCGGCTCCCGTCGCGGTCGAG
GAACCCCCGGCCCTTCCCGAGATCGAGGTCCCGGAGCCCTCCGCGGGGCGTCTGGTGCGTCTGCGCGCCCGGCTCTCCCG
CTCACAGAACGCGCTCGGCAAGGGGCTGCTCACGCTCCTCTCGCGCGAGCACCTCGACGAGGACACCTGGGAGGAGATCG
AGGACACGCTGCTCACCGCCGACGTCGGCGTGCAGCCCACCCAGGAGCTGGTCGACCGGCTGCGTGAGCGTGTGAAGGTG
CTCGGCACCCGTACGCCGGACGAGCTGCGCGCTCTGCTGCGCGAGGAGCTGCTCCAGCTGCTCGTTCCCGAGTTCGACCG
CACGGTCAAGACCGACTCGAACCTCGACACCCCGGGCATCGTGATGGTCGTCGGGGTCAACGGAACCGGCAAGACGACCA
CCACGGGCAAGCTCGCCCGCGTGCTCGTGGCCGACGGCAAGCACGTCCTCCTGGGCGCCGCCGACACCTTCCGTGCCGCC
GCCGCCGACCAGCTGCAGACCTGGGGCGAGCGGGTGGGCGCCCGTACCGTGCGCGGTCCCGAGGGCGGTGACCCGGCCTC
GATCGCCTTCGACGCGGTCAAGGAAGGCATCGAGGAGGGCGCGGACGTCGTCCTCATCGACACCGCGGGCCGGCTGCACA
CCAAGACCGGGCTCATGGACGAGCTCGGCAAGGTCAAGCGCGTCGTCGAGAAGCACGCGCCACTGGACGAGATCCTGCTC
GTCCTCGACGCCACCACCGGACAGAACGGTCTCGTCCAGGCCCGTGTCTTCGCCGAGGTCGTCGACATCACCGGCATCGT
GCTGACCAAGCTCGACGGGACGGCCAAGGGCGGCATCGTGATCGCGGTGCAGCGTGAGCTGGGCGTGCCGGTCAAGCTGG
TCGGTCTGGGAGAGGGGGCGGACGATCTGGCGCCGTTCGAGCCGGAGGCGTTCGTTGACGCCCTTATCGGGGAGTAG

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(200-396)

SRP54-type protein, helical bundle domain (SRP54_N)

(112-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

42.286

87.94

0.372