Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG266_RS11225 Genome accession   NZ_CP107799
Coordinates   2584193..2584969 (+) Length   258 a.a.
NCBI ID   WP_266474334.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00554 strain NBC 00554     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2579193..2589969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG266_RS11210 (OG266_11205) - 2579386..2579919 (+) 534 WP_266474329.1 TerD family protein -
  OG266_RS11215 (OG266_11210) - 2580060..2582960 (-) 2901 WP_329545145.1 vitamin B12-dependent ribonucleotide reductase -
  OG266_RS11220 (OG266_11215) nrdR 2583111..2583674 (-) 564 WP_266833575.1 transcriptional regulator NrdR -
  OG266_RS11225 (OG266_11220) dinR/lexA 2584193..2584969 (+) 777 WP_266474334.1 transcriptional repressor LexA Regulator
  OG266_RS11230 (OG266_11225) - 2585399..2587375 (-) 1977 WP_371545159.1 ATP-dependent DNA helicase -
  OG266_RS11235 (OG266_11230) - 2587464..2589533 (-) 2070 WP_371552739.1 IucA/IucC family siderophore biosynthesis protein -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 27935.63 Da        Isoelectric Point: 7.4756

>NTDB_id=646408 OG266_RS11225 WP_266474334.1 2584193..2584969(+) (dinR/lexA) [Streptomyces sp. NBC_00554 strain NBC 00554]
MTTTADSATITAQDRSQGRLEPVHAMNEAANHEGPKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQSSAQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDV
FPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKREDGHVWLLPHNSAYQPI
PGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 777 bp        

>NTDB_id=646408 OG266_RS11225 WP_266474334.1 2584193..2584969(+) (dinR/lexA) [Streptomyces sp. NBC_00554 strain NBC 00554]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCTGCGAATCATGAGGGGCCCAAGCGATCCCTGCCGGGCCGACCTCCAGGCATCCGGGCGGACAGCTCGGGCCTCA
CCGACCGGCAACGCCGGGTGATCGAGGTCATCAGGGACTCCGTGCAGCGGCGCGGCTACCCGCCGTCGATGCGGGAGATC
GGACAGGCTGTCGGCCTTTCCAGCACCTCCTCGGTCGCGCATCAACTGATGGCACTGGAGCGCAAGGGCTTCCTGCGGCG
CGACCCGCACCGCCCGCGCGCGTACGAGGTCAGGGGCTCGGACCAGTCCTCGGCGCAGCCCACGGACACGGCGGGCAAGC
CGGCCGCGTCGTACGTCCCGCTCGTGGGCCGTATCGCCGCAGGTGGGCCCATCCTGGCCGAGGAGTCGGTGGAGGACGTG
TTCCCCCTCCCCCGCCAGCTGGTCGGCGACGGCGAGCTGTTCGTCCTGAAGGTCGTCGGTGACTCGATGATCGAGGCCGC
CATCTGCGACGGGGACTGGGTCACCGTCCGCCGCCAGCCGGTCGCGGAGAACGGCGACATCGTGGCCGCCATGCTCGAAG
GCGAGGCCACGGTGAAGCGCTTCAAGCGCGAGGACGGGCATGTGTGGCTCCTGCCGCACAACTCCGCGTACCAGCCGATT
CCCGGCGACGAGGCGACCATCCTCGGCAAGGTCGTGGCAGTGCTGCGGCGCGTCTAG

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(140-252)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.714

81.395

0.372