Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG266_RS08860 Genome accession   NZ_CP107799
Coordinates   2006118..2006789 (-) Length   223 a.a.
NCBI ID   WP_371544321.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00554 strain NBC 00554     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2001118..2011789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG266_RS08840 (OG266_08835) - 2001680..2002684 (-) 1005 WP_371544312.1 sugar ABC transporter substrate-binding protein -
  OG266_RS08845 (OG266_08840) - 2002931..2003668 (-) 738 WP_371552709.1 GntR family transcriptional regulator -
  OG266_RS08850 (OG266_08845) - 2003798..2004808 (+) 1011 WP_371544315.1 Gfo/Idh/MocA family oxidoreductase -
  OG266_RS08855 (OG266_08850) - 2004893..2006077 (-) 1185 WP_371544318.1 cytochrome P450 -
  OG266_RS08860 (OG266_08855) vraR 2006118..2006789 (-) 672 WP_371544321.1 response regulator Regulator
  OG266_RS08865 (OG266_08860) - 2007172..2008419 (-) 1248 WP_371552712.1 histidine kinase -
  OG266_RS08870 (OG266_08865) - 2008782..2008988 (+) 207 WP_266473639.1 hypothetical protein -
  OG266_RS08875 (OG266_08870) - 2009039..2009431 (-) 393 WP_266473641.1 ribonuclease domain-containing protein -
  OG266_RS08880 (OG266_08875) - 2009583..2010209 (-) 627 WP_329544757.1 dihydrofolate reductase family protein -
  OG266_RS08885 (OG266_08880) - 2010297..2011124 (-) 828 WP_371544324.1 AIM24 family protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 23823.35 Da        Isoelectric Point: 5.3390

>NTDB_id=646399 OG266_RS08860 WP_371544321.1 2006118..2006789(-) (vraR) [Streptomyces sp. NBC_00554 strain NBC 00554]
MTVIRLLLVDDDPLVRAGLSFMMGGADDIEIVGEAADGSEVAALVDRTRPDVVLMDIRMPNVDGLTATEQLRARKDAPQV
VVLTTFHADDQVLRALRAGAAGFVLKDTPPAEILAAVRRVAAGDPVLSPTVTRQLMAHAAGSALDTRRSGARTRMATLND
REREVAVAVGQGRANAEIATQLFMSVATVKTHVSRILAKLDLNNRVQIALLTYDAGLLEEDGH

Nucleotide


Download         Length: 672 bp        

>NTDB_id=646399 OG266_RS08860 WP_371544321.1 2006118..2006789(-) (vraR) [Streptomyces sp. NBC_00554 strain NBC 00554]
ATGACTGTGATCCGACTGCTCCTTGTCGACGACGACCCCCTGGTGCGGGCCGGCCTGTCCTTCATGATGGGCGGCGCCGA
CGACATCGAGATCGTCGGCGAGGCCGCCGACGGGAGCGAGGTCGCGGCCCTCGTCGACCGCACCCGCCCGGACGTCGTCC
TCATGGACATCCGGATGCCGAACGTCGACGGACTCACGGCCACCGAGCAGCTGCGCGCACGCAAGGACGCTCCCCAGGTC
GTCGTCCTCACCACCTTCCACGCCGACGACCAGGTACTGCGGGCGCTGCGCGCGGGCGCGGCCGGTTTCGTCCTCAAGGA
CACCCCGCCGGCGGAGATCCTCGCGGCGGTACGTCGCGTCGCAGCGGGAGATCCCGTGCTCTCGCCCACCGTCACCCGCC
AGTTGATGGCCCACGCCGCCGGCTCCGCCCTCGACACCCGGCGATCGGGCGCCCGCACGAGGATGGCCACTCTGAACGAC
CGCGAGCGCGAGGTCGCCGTGGCCGTCGGGCAGGGCAGGGCGAACGCCGAGATCGCCACCCAACTCTTCATGAGCGTCGC
CACGGTAAAGACCCATGTCTCGCGGATCCTCGCCAAGCTCGACCTCAACAACCGCGTACAGATCGCCCTGTTGACGTACG
ACGCCGGACTGCTCGAAGAGGACGGGCACTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-118)

Bacterial regulatory proteins, luxR family (GerE)

(157-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.986

98.206

0.363