Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   L1E13_RS20645 Genome accession   NZ_CP090909
Coordinates   4372967..4373593 (+) Length   208 a.a.
NCBI ID   WP_023315767.1    Uniprot ID   A0A837FJ36
Organism   Enterobacter hormaechei strain M1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4367967..4378593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1E13_RS20625 (L1E13_20625) - 4368366..4370126 (-) 1761 WP_045894109.1 Lon protease family protein -
  L1E13_RS20630 (L1E13_20630) matP 4370313..4370765 (+) 453 WP_003858158.1 macrodomain Ter protein MatP -
  L1E13_RS20635 (L1E13_20635) ompA 4370831..4371883 (-) 1053 WP_003858156.1 porin OmpA -
  L1E13_RS20640 (L1E13_20640) sulA 4372240..4372749 (-) 510 WP_032610196.1 SOS-induced cell division inhibitor SulA -
  L1E13_RS20645 (L1E13_20645) sxy/tfoX 4372967..4373593 (+) 627 WP_023315767.1 TfoX/Sxy family DNA transformation protein Regulator
  L1E13_RS20650 (L1E13_20650) yccS 4373550..4375712 (-) 2163 WP_003858151.1 YccS family putative transporter -
  L1E13_RS20655 (L1E13_20655) - 4375731..4376177 (-) 447 WP_003858149.1 YccF domain-containing protein -
  L1E13_RS20660 (L1E13_20660) helD 4376300..4378354 (+) 2055 WP_045894114.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24002.57 Da        Isoelectric Point: 9.4592

>NTDB_id=646394 L1E13_RS20645 WP_023315767.1 4372967..4373593(+) (sxy/tfoX) [Enterobacter hormaechei strain M1]
MKKISYERIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELTEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=646394 L1E13_RS20645 WP_023315767.1 4372967..4373593(+) (sxy/tfoX) [Enterobacter hormaechei strain M1]
ATGAAAAAGATATCTTATGAGCGGATTTATCAATCTCAAGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCTTCCTCTTTTCTGACCCTGATGAAACGAGGACGCCCAGTGCTGCTTAAT
TACTACCGTGTGGACGAAGGTCTGTGGCAAAACAGGGAAAAACTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAAGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCGAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCGATTGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTACGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A837FJ36

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572