Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG956_RS37870 Genome accession   NZ_CP107796
Coordinates   8474085..8474765 (+) Length   226 a.a.
NCBI ID   WP_330342521.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00557     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8469085..8479765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG956_RS37850 (OG956_37850) - 8470476..8470916 (+) 441 WP_330342518.1 peptidoglycan-binding domain-containing protein -
  OG956_RS37855 (OG956_37855) - 8471074..8471283 (-) 210 Protein_7482 relaxase domain-containing protein -
  OG956_RS37860 (OG956_37860) - 8471676..8472566 (-) 891 WP_330342519.1 type II CAAX endopeptidase family protein -
  OG956_RS37865 (OG956_37865) - 8472982..8474088 (+) 1107 WP_330342520.1 histidine kinase -
  OG956_RS37870 (OG956_37870) vraR 8474085..8474765 (+) 681 WP_330342521.1 response regulator transcription factor Regulator
  OG956_RS37875 (OG956_37875) - 8474934..8475038 (-) 105 Protein_7486 IS5/IS1182 family transposase -
  OG956_RS37880 (OG956_37880) - 8475335..8475898 (-) 564 WP_330342522.1 hypothetical protein -
  OG956_RS37885 (OG956_37885) - 8475879..8476055 (+) 177 WP_330342523.1 sigma-70 region 4 domain-containing protein -
  OG956_RS37890 (OG956_37890) - 8476025..8477227 (-) 1203 WP_330342524.1 IS110 family transposase -
  OG956_RS37895 (OG956_37895) - 8477583..8478299 (-) 717 WP_330342525.1 TetR/AcrR family transcriptional regulator C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24341.81 Da        Isoelectric Point: 5.1341

>NTDB_id=646384 OG956_RS37870 WP_330342521.1 8474085..8474765(+) (vraR) [Streptomyces sp. NBC_00557]
MTGADPTQAETDPPVRVLVVDDDELTRTGLRTLLSAGPDLDVVGEVTDGADVPDAVDRLRPDVVLMDVRMPRVDGIEATR
RLRALPDPPKVLVITTFENDSYVWDALRAGAGGFIRKRAPARQIAHAIRLLAFGDSLLFPDAVRRMAVDRPVRQDSSVTA
ALTARETETLRLMARGLSNQEIAARLFVSPETVKTHVGNVLAKLGAGNRTQAVVMAFETGVADPGT

Nucleotide


Download         Length: 681 bp        

>NTDB_id=646384 OG956_RS37870 WP_330342521.1 8474085..8474765(+) (vraR) [Streptomyces sp. NBC_00557]
GTGACTGGCGCCGACCCCACCCAGGCCGAGACAGACCCGCCGGTGAGGGTGCTCGTCGTGGACGACGACGAGCTGACCCG
CACCGGGCTGCGGACGCTGCTGTCGGCCGGCCCTGACCTGGACGTGGTCGGCGAGGTCACCGACGGGGCCGACGTGCCCG
ACGCGGTGGACCGGTTACGACCGGACGTGGTGCTGATGGACGTCAGGATGCCCCGGGTGGACGGCATCGAGGCCACCCGT
CGGCTGCGCGCGTTGCCCGATCCGCCCAAAGTCCTGGTGATCACCACGTTCGAGAACGACTCCTACGTCTGGGACGCGCT
GCGGGCAGGCGCAGGCGGCTTCATCCGCAAGCGCGCTCCGGCCCGGCAGATCGCGCACGCCATCCGCCTGCTGGCCTTCG
GCGATTCCCTGCTGTTCCCCGACGCGGTGCGCCGCATGGCCGTCGACCGTCCGGTACGGCAGGACTCCTCGGTCACGGCC
GCGCTCACCGCCCGCGAGACCGAGACGCTGCGGCTGATGGCGCGCGGTCTGTCCAACCAGGAGATCGCCGCGCGCCTGTT
CGTCAGTCCCGAGACTGTGAAGACCCATGTCGGCAACGTGCTCGCCAAGTTGGGTGCGGGCAACCGCACCCAGGCGGTCG
TGATGGCCTTCGAGACGGGCGTGGCCGACCCCGGGACGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(161-216)

Response regulator receiver domain (Response_reg)

(17-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.614

91.593

0.363