Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG956_RS24355 Genome accession   NZ_CP107796
Coordinates   5579344..5581077 (-) Length   577 a.a.
NCBI ID   WP_330340110.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00557     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5574344..5586077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG956_RS24340 (OG956_24335) - 5575828..5576049 (-) 222 WP_330340107.1 hypothetical protein -
  OG956_RS24345 (OG956_24340) - 5576116..5577378 (+) 1263 WP_330340108.1 RNA polymerase sigma factor -
  OG956_RS24350 (OG956_24345) rcrQ 5577413..5579344 (-) 1932 WP_330340109.1 ABC transporter ATP-binding protein Regulator
  OG956_RS24355 (OG956_24350) rcrP 5579344..5581077 (-) 1734 WP_330340110.1 ABC transporter ATP-binding protein Regulator
  OG956_RS24360 (OG956_24355) - 5581219..5582658 (-) 1440 WP_330340111.1 FGGY family carbohydrate kinase -
  OG956_RS24365 (OG956_24360) - 5582777..5583082 (-) 306 WP_330340112.1 YtxH domain-containing protein -
  OG956_RS24385 (OG956_24380) - 5583793..5585643 (-) 1851 WP_330340113.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62595.02 Da        Isoelectric Point: 7.0888

>NTDB_id=646366 OG956_RS24355 WP_330340110.1 5579344..5581077(-) (rcrP) [Streptomyces sp. NBC_00557]
MLIRLLRTYLRPYKKPIALLVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILSFGALMIGISLAQVVCNIGAVYYGA
RTASALGRDVRGAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQIQMLVLMSFTLMVSAPIMCVGGIVLALGLDVPLSGV
LVAVVPVLALCVTLIVRRLRPLFRSMQVRLDTVNRVLREQITGNRVIRAFVRDQYEQERFGKANGDLTDMQLATGRMLAL
MFPMVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIEEVLGTDSSVVP
PAAPVTELRAHGHLELRGAGFRYPGAEEPVLKAVDLVARPGEVTAVIGSTGSGKSTLLGLVPRLFDATEGEVLVNGVRVD
EVDPKLLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKDFVRKLEGGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETAEATVVIVAQRVATIRDADRIVVLDEGRVVGSGRHRELMAAN
DTYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=646366 OG956_RS24355 WP_330340110.1 5579344..5581077(-) (rcrP) [Streptomyces sp. NBC_00557]
GTGCTCATACGACTTCTGCGGACCTATCTCAGGCCCTACAAGAAACCCATAGCCCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACCCTCTACCTGCCCACACTGAACGCGCACATCATCGACAACGGTGTCGTGAAGGGTGACACGGGTTACA
TCCTGTCCTTCGGTGCCCTGATGATCGGCATCTCGCTGGCGCAGGTCGTGTGCAACATCGGTGCCGTGTACTACGGCGCC
CGGACCGCCTCCGCACTCGGCCGGGACGTGCGCGGCGCCGTCTTCGACCGGGTGCAGTCCTTCTCCGCGCGTGAGGTGGG
TCACTTCGGGGCGCCCTCGCTCATCACCCGTACGACGAACGACGTACAGCAGATCCAGATGCTGGTCCTGATGTCGTTCA
CCCTGATGGTGTCGGCGCCCATCATGTGCGTGGGCGGCATCGTGCTGGCGCTCGGCCTGGACGTGCCGCTGTCCGGGGTG
CTGGTCGCGGTGGTGCCGGTGCTGGCGCTCTGCGTCACCCTCATCGTGCGCCGGCTGCGGCCGCTGTTCCGGTCGATGCA
GGTCCGCCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCCTTCGTGCGGGACC
AGTACGAGCAGGAGCGGTTCGGGAAGGCCAACGGCGACCTGACCGACATGCAGCTGGCCACCGGGCGGATGCTCGCGCTG
ATGTTCCCGATGGTCATGACGGTGGTGAACCTGTCGTCCATCGCGGTGGTGTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGGATGCAGATCGGCGACCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGCATCGAGGAGGTCCTCGGGACCGACTCCAGCGTGGTCCCG
CCGGCCGCGCCCGTCACCGAGCTGCGCGCGCACGGCCATCTGGAGCTCCGGGGCGCGGGCTTCCGCTATCCGGGCGCCGA
GGAGCCGGTGCTGAAGGCCGTCGACCTGGTGGCCCGCCCGGGTGAGGTGACCGCCGTGATCGGCTCGACCGGCAGCGGCA
AGTCCACACTGCTCGGGCTGGTCCCGCGGCTGTTCGACGCCACCGAGGGTGAAGTCCTGGTCAACGGCGTGCGGGTGGAC
GAGGTCGACCCGAAGCTGCTCGCGCGGACGGTCGGACTGGTGCCGCAGAAGCCGTACCTGTTCGCCGGCACGGTCGCCAC
CAATCTGCGGTACGGCAATCCGGACGCCACCGACGAGGAACTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGACTTCG
TGCGGAAACTGGAGGGCGGGCTGGACGCGCCGATCGCACAGGGAGGCACCAACGTCTCCGGCGGTCAGCGGCAGCGGCTC
GCCATCGCCCGCACCCTCGTGCAGCGGCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCCACCGA
CGCCGCCCTGCGCGCCGCGCTCGCCCGGGAGACCGCCGAGGCGACCGTCGTCATCGTCGCCCAGCGGGTGGCGACCATCC
GCGACGCCGACCGGATCGTCGTGCTGGACGAGGGCCGGGTCGTCGGCTCCGGCCGGCACCGGGAGCTGATGGCGGCCAAC
GACACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.175

100

0.395