Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   OG956_RS17455 Genome accession   NZ_CP107796
Coordinates   4076699..4077820 (-) Length   373 a.a.
NCBI ID   WP_330338897.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00557     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4071699..4082820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG956_RS17445 (OG956_17430) gyrB 4073634..4075733 (-) 2100 WP_330338896.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  OG956_RS17450 (OG956_17435) - 4076130..4076651 (-) 522 WP_330342873.1 DciA family protein -
  OG956_RS17455 (OG956_17440) recF 4076699..4077820 (-) 1122 WP_330338897.1 DNA replication/repair protein RecF Machinery gene
  OG956_RS17460 (OG956_17445) gnd 4077975..4078850 (-) 876 WP_330338898.1 decarboxylating 6-phosphogluconate dehydrogenase -
  OG956_RS17465 (OG956_17450) dnaN 4079035..4080165 (-) 1131 WP_330338899.1 DNA polymerase III subunit beta -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 40683.47 Da        Isoelectric Point: 9.0675

>NTDB_id=646352 OG956_RS17455 WP_330338897.1 4076699..4077820(-) (recF) [Streptomyces sp. NBC_00557]
MHVTHLSLADFRSYARAEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVASDAPLVRMGAERAVIRAQVRQGDRQ
QLVELELNPGKANRARINRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQ
RNTLLKTAALARRHGGRSMDLSTLDVWDQHLARAGAELLAQRLDLIAALQPLADKAYEQLAPGGGPLALEYKPSALGEAQ
AREDLYAQLMAALAQARKQEIERGVTLVGPHRDDLVLKLGQLPAKGYASHGESWSYALALRLASYDLLRAEGNEPVLVLD
DVFAELDARRRDRLAELVAPGEQVLVTAAVEDDVPRMLAGARYTVSGGTVERV

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=646352 OG956_RS17455 WP_330338897.1 4076699..4077820(-) (recF) [Streptomyces sp. NBC_00557]
ATGCACGTCACGCATCTTTCGCTGGCCGACTTCCGCTCGTACGCCCGGGCCGAGGTCCCGCTCGACCCGGGCGTCACCGC
GTTCGTCGGCCCCAACGGGCAGGGCAAGACGAATCTGGTCGAAGCGGTCGGATACCTGGCCACGCTCGGCAGCCACCGGG
TCGCCTCGGACGCTCCGCTCGTCCGCATGGGCGCCGAGCGCGCCGTCATCCGGGCGCAGGTCCGGCAGGGCGACCGGCAG
CAGCTGGTCGAGCTGGAGCTGAACCCGGGCAAGGCCAACCGCGCCCGTATCAACCGGTCCTCGCAGGTCAGGCCCAGGGA
CGTGCTGGGGATCGTACGGACCGTGCTGTTCGCGCCCGAGGATCTCGCCCTGGTCAAGGGCGATCCCGGCGAACGGCGGC
GGTTCCTCGACGAGTTGATCACCGCTCGGTCGCCGCGCATGGCCGGGGTGCGCTCCGACTACGAGCGCGTCCTCAAGCAG
CGCAACACCCTGCTCAAGACCGCCGCCCTGGCGCGCCGGCACGGCGGGCGGTCCATGGACTTGTCCACACTCGACGTGTG
GGACCAGCATCTCGCGCGCGCGGGCGCCGAGTTGCTCGCCCAGCGCCTCGACCTGATCGCCGCGCTGCAGCCGCTGGCCG
ACAAGGCGTACGAGCAACTGGCTCCTGGCGGCGGCCCGCTGGCGCTGGAGTACAAGCCGTCCGCGCTCGGTGAGGCCCAA
GCGCGCGAGGATCTCTACGCCCAGCTGATGGCGGCGCTGGCCCAGGCCCGCAAGCAGGAGATCGAACGCGGGGTCACCCT
GGTGGGCCCGCACCGCGACGACCTGGTCCTCAAACTGGGTCAGCTGCCCGCCAAGGGGTACGCCTCGCACGGCGAGTCCT
GGTCCTACGCGCTCGCCCTGCGCCTGGCCTCCTACGACCTGCTGCGGGCCGAGGGCAACGAGCCGGTGCTGGTCCTGGAC
GACGTCTTCGCCGAGCTGGACGCGCGGCGCCGGGACCGGCTGGCCGAGCTGGTCGCGCCCGGCGAGCAGGTGCTGGTCAC
CGCCGCCGTGGAAGACGACGTACCGCGGATGCTGGCCGGGGCGCGGTACACCGTGTCCGGAGGGACGGTGGAGCGCGTAT
GA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.136

94.906

0.362