Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   L0961_RS17060 Genome accession   NZ_CP090905
Coordinates   3428399..3429784 (-) Length   461 a.a.
NCBI ID   WP_043867470.1    Uniprot ID   -
Organism   Bacillus velezensis strain Yao     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3423399..3434784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0961_RS17025 (L0961_17025) flgL 3423574..3424491 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  L0961_RS17030 (L0961_17030) flgK 3424503..3426020 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  L0961_RS17035 (L0961_17035) - 3426036..3426518 (-) 483 WP_003151394.1 flagellar protein FlgN -
  L0961_RS17040 (L0961_17040) flgM 3426533..3426799 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  L0961_RS17045 (L0961_17045) - 3426869..3427288 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  L0961_RS17050 (L0961_17050) comFC 3427362..3428051 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  L0961_RS17055 (L0961_17055) - 3428057..3428341 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  L0961_RS17060 (L0961_17060) comFA 3428399..3429784 (-) 1386 WP_043867470.1 DEAD/DEAH box helicase Machinery gene
  L0961_RS17065 (L0961_17065) - 3429892..3430740 (-) 849 WP_003151387.1 DegV family protein -
  L0961_RS17070 (L0961_17070) degU 3430838..3431527 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  L0961_RS17075 (L0961_17075) degS 3431604..3432767 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  L0961_RS17080 (L0961_17080) - 3432990..3433637 (+) 648 WP_003151384.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52558.09 Da        Isoelectric Point: 10.0979

>NTDB_id=646333 L0961_RS17060 WP_043867470.1 3428399..3429784(-) (comFA) [Bacillus velezensis strain Yao]
MAEGASEFSEVRDFFYGRHLLRSEIPFSDHCIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTLLYSWNQAPENRWKPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQELQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVLFHFGITVGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=646333 L0961_RS17060 WP_043867470.1 3428399..3429784(-) (comFA) [Bacillus velezensis strain Yao]
ATGGCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATTGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATTATTATATTCTTGGAATCAAGCCCCTGAAAACAG
ATGGAAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGACGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTCGCGACTCCGCGCACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAATGCTGAAGCCGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAGAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCTAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATTACAGTCGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(326-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.261

99.783

0.631