Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   SPYOHK_RS05665 Genome accession   NZ_AFRY01000001
Coordinates   694574..695611 (+) Length   345 a.a.
NCBI ID   WP_002989068.1    Uniprot ID   Q1JKX2
Organism   Streptococcus pyogenes HKU QMH11M0907901     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 689574..700611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPYOHK_RS05690 (SPYOHK_03385) - 689837..691168 (+) 1332 WP_002989063.1 dipeptidase -
  SPYOHK_RS05685 (SPYOHK_03390) arcC 691188..692138 (+) 951 WP_002989065.1 carbamate kinase -
  SPYOHK_RS05680 (SPYOHK_03395) asnA 692452..693444 (+) 993 WP_002983817.1 aspartate--ammonia ligase -
  SPYOHK_RS05675 (SPYOHK_03400) rsmD 693567..694106 (+) 540 WP_002983819.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  SPYOHK_RS05670 (SPYOHK_03405) coaD 694096..694587 (+) 492 WP_002983821.1 pantetheine-phosphate adenylyltransferase -
  SPYOHK_RS05665 (SPYOHK_03410) sepM 694574..695611 (+) 1038 WP_002989068.1 SepM family pheromone-processing serine protease Regulator
  SPYOHK_RS05660 (SPYOHK_03415) - 696016..696993 (+) 978 WP_002989070.1 LacI family DNA-binding transcriptional regulator -
  SPYOHK_RS05655 (SPYOHK_03420) - 697441..698061 (+) 621 WP_032461520.1 YutD family protein -
  SPYOHK_RS05650 (SPYOHK_03425) rlmN 698065..699144 (+) 1080 WP_002989074.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  SPYOHK_RS05645 (SPYOHK_03430) - 699226..699852 (-) 627 WP_002989076.1 prepilin peptidase -
  SPYOHK_RS05640 (SPYOHK_03435) - 700080..700607 (+) 528 WP_002983837.1 Dps family protein -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 37527.17 Da        Isoelectric Point: 9.5788

>NTDB_id=64631 SPYOHK_RS05665 WP_002989068.1 694574..695611(+) (sepM) [Streptococcus pyogenes HKU QMH11M0907901]
MKRLNKIKWWLVGLLALISLLLALFFPLPYYIEMPGGAYDIRTVLQVNGKEDKRKGAYQFVAVGISRASLAQLLYAWLTP
FTEISTAEDTTGGYSDADFLRINQFYMETSQNAAIYQALSLAGKPVTLDYKGVYVLDVNNESTFKGTLHLADTVTGVNGK
QFTSSAELIDYVSHLKLGDEVTVQFTSDNKPKKGVGRIIKLKNGKNGIGIALTDHTSVNSEDTVIFSTKGVGGPSAGLMF
TLDIYDQITKEDLRKGRTIAGTGTIGKDGEVGDIGGAGLKVVAAAEAGADIFFVPNNPVDKEIKKVNPNAISNYEEAKRA
AKRLKTKMKIVPVTTVQEALVYLRK

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=64631 SPYOHK_RS05665 WP_002989068.1 694574..695611(+) (sepM) [Streptococcus pyogenes HKU QMH11M0907901]
ATGAAAAGACTTAACAAAATCAAATGGTGGTTAGTGGGTCTGCTAGCTTTAATCTCTTTGTTGCTAGCGTTATTTTTTCC
GCTACCTTATTATATTGAAATGCCTGGAGGCGCTTACGATATTCGGACTGTCTTACAAGTCAATGGCAAAGAAGACAAAC
GAAAAGGAGCTTACCAGTTTGTTGCAGTGGGCATTAGTCGTGCCAGCCTCGCTCAGCTATTATATGCTTGGCTGACACCG
TTTACTGAAATTAGTACAGCAGAAGATACAACAGGCGGATACAGCGATGCTGATTTCCTTCGAATTAATCAATTTTACAT
GGAAACATCACAAAATGCAGCTATTTATCAAGCTTTATCCTTAGCTGGAAAACCAGTTACATTAGATTATAAAGGCGTAT
ATGTTTTAGACGTAAACAACGAATCTACTTTTAAAGGAACGTTACACTTAGCAGATACTGTAACAGGTGTAAATGGTAAA
CAGTTTACTAGTTCAGCAGAACTTATTGACTATGTTTCTCACCTAAAACTAGGGGATGAAGTTACGGTTCAGTTTACGAG
TGATAATAAGCCTAAAAAAGGAGTTGGCCGTATTATCAAACTGAAAAATGGGAAAAATGGGATTGGCATTGCCTTGACTG
ATCATACAAGTGTCAATTCAGAAGACACAGTGATCTTTAGTACTAAAGGAGTAGGAGGACCTAGTGCTGGTCTAATGTTT
ACTCTTGATATATATGATCAAATAACTAAAGAAGATTTACGCAAGGGCCGTACAATTGCAGGTACAGGAACTATTGGCAA
GGATGGCGAAGTAGGAGATATTGGTGGTGCAGGTCTTAAAGTAGTTGCAGCAGCTGAAGCTGGTGCAGATATATTTTTTG
TTCCGAATAATCCTGTTGATAAGGAAATTAAAAAAGTTAATCCAAATGCTATAAGTAATTACGAAGAAGCCAAACGGGCA
GCCAAACGACTAAAGACCAAAATGAAGATTGTTCCTGTTACGACTGTTCAAGAGGCACTGGTTTATCTTCGCAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q1JKX2

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

68.986

100

0.69


Multiple sequence alignment