Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA33_RS29460 Genome accession   NZ_CP107791
Coordinates   6569862..6570503 (+) Length   213 a.a.
NCBI ID   WP_330246601.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00562     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6564862..6575503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA33_RS29445 (OHA33_29495) - 6565219..6567339 (+) 2121 WP_267000965.1 DNA topoisomerase IV subunit B -
  OHA33_RS29450 (OHA33_29500) - 6567503..6567979 (+) 477 Protein_5802 histidine kinase -
  OHA33_RS29455 (OHA33_29505) - 6568190..6569818 (+) 1629 WP_330248997.1 transposase -
  OHA33_RS29460 (OHA33_29510) vraR 6569862..6570503 (+) 642 WP_330246601.1 response regulator transcription factor Regulator
  OHA33_RS29465 (OHA33_29515) - 6570635..6571078 (+) 444 WP_267007927.1 DUF485 domain-containing protein -
  OHA33_RS29470 (OHA33_29520) - 6571075..6572667 (+) 1593 WP_330246602.1 cation acetate symporter -
  OHA33_RS29475 (OHA33_29525) - 6572731..6573408 (-) 678 WP_328625942.1 response regulator -
  OHA33_RS29480 (OHA33_29530) - 6573405..6575075 (-) 1671 WP_330246603.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23169.45 Da        Isoelectric Point: 8.0417

>NTDB_id=646299 OHA33_RS29460 WP_330246601.1 6569862..6570503(+) (vraR) [Streptomyces sp. NBC_00562]
MVREGFVMLLGRQGSRWWYRRGTGEESVALVAEQAPDVVLMDLRMPRCDGVEATRRIREQYPNTQVVVLTTFADDDSLFP
ALQAGARGYLTKDAGGDEIVRAIQAVLSGEAGLSPAVQRRLLERVTTAPAPAGPPAGEQQLPDGLTPREAEVLVLIAEGL
SNPEIARKLHISQATVKSHINNLFAKAGVRDRAQAVRYAYVRGLAHPPGTFFT

Nucleotide


Download         Length: 642 bp        

>NTDB_id=646299 OHA33_RS29460 WP_330246601.1 6569862..6570503(+) (vraR) [Streptomyces sp. NBC_00562]
GTGGTGCGTGAGGGATTCGTGATGCTGCTGGGGCGCCAGGGGTCGAGGTGGTGGTATAGGCGAGGGACGGGGGAAGAGTC
CGTCGCGCTCGTCGCCGAGCAGGCTCCGGATGTGGTTCTGATGGACCTCCGCATGCCGCGTTGCGACGGGGTGGAGGCGA
CGCGGCGTATCCGCGAGCAGTACCCGAACACTCAGGTGGTGGTGCTCACGACGTTCGCGGACGACGACTCGCTCTTCCCC
GCACTCCAGGCGGGGGCTCGTGGATATCTCACCAAGGACGCCGGGGGCGACGAGATCGTGCGGGCCATCCAGGCTGTGCT
GTCGGGCGAGGCCGGACTCTCGCCCGCGGTGCAGCGGCGGCTGCTGGAGCGGGTCACCACGGCACCCGCGCCGGCCGGTC
CACCGGCCGGCGAGCAGCAACTGCCCGACGGCCTCACGCCCCGCGAGGCGGAAGTGCTCGTCCTGATCGCCGAGGGACTG
TCCAACCCGGAGATCGCCCGCAAGCTGCACATCTCGCAGGCCACCGTGAAGAGCCACATCAACAATCTCTTCGCCAAGGC
CGGAGTGCGCGACAGGGCACAGGCCGTGCGCTATGCGTATGTTCGCGGGCTCGCACACCCGCCCGGGACATTCTTCACCT
GA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(144-199)

Response regulator receiver domain (Response_reg)

(22-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.561

96.244

0.362