Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   L0961_RS00250 Genome accession   NZ_CP090905
Coordinates   45571..45861 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain Yao     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40571..50861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0961_RS00210 (L0961_00210) darA 40588..40917 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  L0961_RS00215 (L0961_00215) - 40930..41370 (+) 441 WP_004264730.1 YaaR family protein -
  L0961_RS00220 (L0961_00220) holB 41382..42371 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  L0961_RS00225 (L0961_00225) ricT 42374..43201 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  L0961_RS00230 (L0961_00230) yabA 43216..43575 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  L0961_RS00235 (L0961_00235) - 43636..44379 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  L0961_RS00240 (L0961_00240) - 44366..44665 (+) 300 WP_004264714.1 GIY-YIG nuclease family protein -
  L0961_RS00245 (L0961_00245) rsmI 44640..45521 (+) 882 WP_044052729.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  L0961_RS00250 (L0961_00250) abrB 45571..45861 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  L0961_RS00255 (L0961_00255) metG 46344..48335 (+) 1992 WP_234949538.1 methionine--tRNA ligase -
  L0961_RS00260 (L0961_00260) - 48411..49178 (+) 768 WP_004264700.1 TatD family hydrolase -
  L0961_RS00265 (L0961_00265) - 49313..50638 (+) 1326 WP_088005470.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=646272 L0961_RS00250 WP_169510469.1 45571..45861(-) (abrB) [Bacillus velezensis strain Yao]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=646272 L0961_RS00250 WP_169510469.1 45571..45861(-) (abrB) [Bacillus velezensis strain Yao]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979