Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   L0894_RS05235 Genome accession   NZ_CP090904
Coordinates   1132837..1133790 (+) Length   317 a.a.
NCBI ID   WP_003491502.1    Uniprot ID   A0AAU8YWH2
Organism   Clostridium sporogenes strain LHA6     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1127837..1138790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0894_RS05210 (L0894_05210) - 1127963..1128199 (+) 237 WP_033058948.1 SHOCT domain-containing protein -
  L0894_RS05215 (L0894_05215) - 1128465..1129166 (+) 702 WP_033058950.1 response regulator transcription factor -
  L0894_RS05220 (L0894_05220) - 1129166..1130572 (+) 1407 WP_033058952.1 sensor histidine kinase -
  L0894_RS05225 (L0894_05225) - 1130912..1131598 (-) 687 WP_033058954.1 DNA alkylation repair protein -
  L0894_RS05230 (L0894_05230) - 1131834..1132592 (-) 759 WP_003491501.1 helix-turn-helix domain-containing protein -
  L0894_RS05235 (L0894_05235) ceuB 1132837..1133790 (+) 954 WP_003491502.1 ABC transporter permease Machinery gene
  L0894_RS05240 (L0894_05240) - 1133780..1134730 (+) 951 WP_033058956.1 iron chelate uptake ABC transporter family permease subunit -
  L0894_RS05245 (L0894_05245) - 1134727..1135482 (+) 756 WP_003491504.1 ABC transporter ATP-binding protein -
  L0894_RS05250 (L0894_05250) - 1135556..1136500 (+) 945 WP_033058959.1 siderophore ABC transporter substrate-binding protein -
  L0894_RS05255 (L0894_05255) - 1136702..1137703 (+) 1002 WP_003491506.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34995.46 Da        Isoelectric Point: 10.1754

>NTDB_id=646253 L0894_RS05235 WP_003491502.1 1132837..1133790(+) (ceuB) [Clostridium sporogenes strain LHA6]
MKKRYLILTLIILSICSIFIGVKDISFVDIFKSDDVKLKVLLISRIPRLISIIIVGATMSIAGLIMQQISRNKFVSPDTA
STVDSAKLGILVALMIFPSATLTEKMIVSFIFSLLGTFLFMKILKKIKAKNSIFIPLVGIMLGNIIDSITTFFAYKYNLI
QSIASWLQGDFSLIIKGNYELIYLSLPLVVISFIYANKFTVAGMGEDFSKNLGVNYNRIINMGLVIVALISSLVVITVGK
IPFLGLIVPNIVTLYKGDNLKNSIWITALLGAVFLLGCDILGRLIIYPYEISIGLVVGVIGSIVFLYLLFRRNGNEV

Nucleotide


Download         Length: 954 bp        

>NTDB_id=646253 L0894_RS05235 WP_003491502.1 1132837..1133790(+) (ceuB) [Clostridium sporogenes strain LHA6]
ATGAAAAAGAGATATTTAATTTTGACATTAATTATTTTATCTATTTGTTCAATATTTATTGGAGTAAAAGATATTAGTTT
TGTAGATATATTTAAATCAGATGATGTTAAGCTTAAGGTATTATTAATTAGTAGAATCCCGAGACTTATAAGTATTATTA
TAGTAGGGGCTACTATGAGTATAGCAGGACTTATTATGCAGCAGATAAGTCGGAATAAATTTGTATCCCCAGATACAGCT
TCAACTGTAGATAGTGCAAAGCTTGGTATTTTGGTTGCTTTAATGATATTTCCTTCAGCAACTCTTACTGAAAAAATGAT
AGTTTCCTTTATATTTTCTTTATTGGGCACATTCTTATTTATGAAAATTTTAAAGAAAATAAAAGCTAAAAATTCTATAT
TTATACCCCTTGTTGGTATAATGCTTGGAAATATTATAGATTCCATAACCACGTTTTTCGCATATAAATACAATCTTATT
CAAAGTATCGCATCTTGGCTTCAAGGTGATTTTTCTTTAATTATTAAAGGTAATTATGAACTTATATATCTAAGTTTACC
TCTTGTAGTTATATCTTTTATTTATGCTAATAAATTTACAGTAGCAGGTATGGGAGAGGATTTTTCTAAGAATTTAGGAG
TTAATTATAATAGAATCATAAATATGGGGCTTGTAATAGTAGCATTAATATCTTCACTAGTAGTTATTACTGTAGGGAAA
ATACCATTTTTAGGTCTTATAGTACCCAATATAGTTACTCTTTATAAAGGAGATAATTTAAAAAATAGTATTTGGATAAC
AGCATTACTTGGAGCAGTATTTCTTTTAGGATGTGATATATTAGGTAGGTTAATTATTTATCCTTATGAAATATCTATAG
GACTTGTAGTTGGAGTTATAGGAAGCATAGTATTCCTTTATCTCTTGTTTAGGAGGAATGGCAATGAAGTATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.161

98.107

0.492