Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA33_RS06515 Genome accession   NZ_CP107791
Coordinates   1474435..1475130 (-) Length   231 a.a.
NCBI ID   WP_330243645.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00562     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1469435..1480130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA33_RS06490 (OHA33_06500) - 1470323..1470568 (-) 246 WP_330248797.1 ferredoxin -
  OHA33_RS06495 (OHA33_06505) - 1470741..1471418 (-) 678 WP_330243641.1 hypothetical protein -
  OHA33_RS06500 (OHA33_06510) - 1471747..1472217 (-) 471 WP_330243642.1 zf-HC2 domain-containing protein -
  OHA33_RS06505 (OHA33_06515) - 1472532..1473350 (-) 819 WP_330243643.1 ABC transporter permease -
  OHA33_RS06510 (OHA33_06520) - 1473347..1474285 (-) 939 WP_330243644.1 ATP-binding cassette domain-containing protein -
  OHA33_RS06515 (OHA33_06525) vraR 1474435..1475130 (-) 696 WP_330243645.1 response regulator transcription factor Regulator
  OHA33_RS06520 (OHA33_06530) - 1475102..1476361 (-) 1260 WP_330243646.1 sensor histidine kinase -
  OHA33_RS06525 (OHA33_06535) - 1476576..1477070 (-) 495 WP_330243647.1 lamin tail domain-containing protein -
  OHA33_RS06530 (OHA33_06540) - 1477834..1479324 (+) 1491 WP_330243648.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 24824.57 Da        Isoelectric Point: 4.4062

>NTDB_id=646243 OHA33_RS06515 WP_330243645.1 1474435..1475130(-) (vraR) [Streptomyces sp. NBC_00562]
MTIRVLLADDQALLRGTFRMLFDSADDMETVGEASNGCEAVDLAHAQHPDVLLMDIRMPEMDGLAATRLISESEDLAGVK
VLILTTFEDDEYVAEALRAGASGFLGKGARPEELLDAVRTVAGGEALLCPSAARALITRFLMQPEACPAAMHERLACLTP
RERDVLTLVAMGLSNDEIADRLFISPLTAKTHVNRAMTKLDARDRAQLVVIAYQCGLVSPAMEPSGPSTSV

Nucleotide


Download         Length: 696 bp        

>NTDB_id=646243 OHA33_RS06515 WP_330243645.1 1474435..1475130(-) (vraR) [Streptomyces sp. NBC_00562]
ATGACGATCCGCGTACTGCTGGCCGATGACCAGGCACTGCTTCGGGGCACCTTCCGGATGCTGTTCGATTCTGCGGACGA
CATGGAGACCGTGGGTGAGGCGTCCAACGGCTGCGAGGCAGTGGACCTGGCGCATGCGCAGCACCCCGATGTGCTCCTGA
TGGACATCCGCATGCCCGAGATGGACGGCCTCGCCGCGACGCGGCTGATCAGCGAGTCGGAGGACCTCGCGGGGGTCAAG
GTCCTCATCCTGACCACCTTCGAGGACGACGAGTACGTCGCCGAGGCACTGCGTGCGGGTGCGAGCGGTTTTCTCGGCAA
GGGTGCGCGGCCCGAGGAGCTTCTCGACGCCGTGCGCACGGTCGCCGGCGGGGAGGCACTGCTGTGCCCGTCGGCCGCCC
GAGCGCTGATCACGCGATTTCTGATGCAGCCGGAAGCATGCCCGGCGGCCATGCACGAGCGGCTGGCCTGCCTTACGCCA
CGGGAACGGGATGTCCTGACACTTGTCGCAATGGGGCTGTCGAACGACGAGATCGCCGATCGCCTGTTCATCAGCCCGCT
GACCGCCAAGACCCACGTCAACCGGGCCATGACCAAGCTGGATGCCCGTGACCGTGCCCAGCTCGTGGTCATCGCCTACC
AGTGCGGACTGGTGAGCCCGGCGATGGAGCCGAGCGGTCCGTCGACATCCGTGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-212)

Response regulator receiver domain (Response_reg)

(5-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.356

94.805

0.364