Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   SPYOHK_RS01905 Genome accession   NZ_AFRY01000001
Coordinates   1499175..1499984 (-) Length   269 a.a.
NCBI ID   WP_002985641.1    Uniprot ID   -
Organism   Streptococcus pyogenes HKU QMH11M0907901     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1494175..1504984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPYOHK_RS01915 (SPYOHK_07360) smc 1494511..1498050 (-) 3540 WP_002990667.1 chromosome segregation protein SMC -
  SPYOHK_RS01910 (SPYOHK_07365) rnc 1498051..1498743 (-) 693 WP_002990670.1 ribonuclease III -
  SPYOHK_RS01905 (SPYOHK_07370) vicX 1499175..1499984 (-) 810 WP_002985641.1 MBL fold metallo-hydrolase Regulator
  SPYOHK_RS01900 (SPYOHK_07375) vicK 1499988..1501340 (-) 1353 WP_002990673.1 cell wall metabolism sensor histidine kinase VicK Regulator
  SPYOHK_RS01895 (SPYOHK_07380) vicR 1501333..1502043 (-) 711 WP_002985645.1 response regulator YycF Regulator
  SPYOHK_RS01890 (SPYOHK_07385) - 1502205..1503239 (-) 1035 WP_002990676.1 DUF3114 domain-containing protein -
  SPYOHK_RS01885 (SPYOHK_07390) - 1503295..1504542 (-) 1248 WP_002990679.1 AMP-binding protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30095.20 Da        Isoelectric Point: 5.5314

>NTDB_id=64620 SPYOHK_RS01905 WP_002985641.1 1499175..1499984(-) (vicX) [Streptococcus pyogenes HKU QMH11M0907901]
MNESGFKYSILASGSTGNCFYLETPKKRLLIDAGLTGKKITSLLAEIDRKPEDLDAILITHEHSDHIKGVGVMARKYHLD
IYANEKTWQLMDECNMLGKLDASQKHIFQRDKVLTFGDVDIESFGVSHDAIDPQFYRIMKDNKSFVMLTDTGYVSDRMTG
IIENADGYLIESNHDIEILRSGSYPWSLKQRILSDLGHLSNEDGAGAMIRSLGYNTKKIYLGHLSKENNIKELAHMTMVN
QLAMADLAVGTDFTVHDTSPDTACPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=64620 SPYOHK_RS01905 WP_002985641.1 1499175..1499984(-) (vicX) [Streptococcus pyogenes HKU QMH11M0907901]
ATGAATGAGAGTGGTTTTAAATATAGTATTTTAGCATCTGGGTCCACAGGAAATTGTTTTTATTTAGAAACACCTAAAAA
ACGCTTATTGATTGATGCAGGGCTTACTGGTAAGAAAATTACCAGTCTTCTTGCTGAAATTGACCGCAAACCTGAGGATT
TGGATGCTATTTTGATTACCCATGAGCACTCTGACCATATTAAGGGTGTAGGCGTTATGGCCCGCAAATACCATTTGGAT
ATCTATGCTAATGAAAAAACATGGCAGCTGATGGATGAGTGCAATATGCTAGGTAAGCTTGATGCCTCACAAAAACATAT
TTTCCAAAGGGATAAAGTTTTGACCTTTGGAGATGTTGATATCGAAAGTTTTGGAGTCAGCCATGACGCTATTGATCCTC
AATTTTATCGGATTATGAAAGATAATAAGTCTTTTGTGATGTTGACAGATACAGGATATGTCAGTGATAGGATGACAGGT
ATTATTGAAAATGCAGATGGCTACTTGATTGAATCCAATCATGATATTGAAATTTTGAGATCAGGCTCTTATCCTTGGAG
CTTGAAGCAGCGTATTTTATCTGATTTAGGACATTTATCAAATGAAGATGGAGCGGGAGCCATGATTAGAAGCCTGGGGT
ACAATACCAAAAAAATATACCTAGGTCATCTGAGTAAAGAAAATAACATCAAAGAGTTAGCGCATATGACGATGGTCAAT
CAACTGGCTATGGCAGATTTAGCAGTAGGTACAGACTTTACGGTCCATGATACCTCTCCAGATACTGCTTGTCCATTAAC
TGATATTTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

75.836

100

0.758

Multiple sequence alignment