Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   L0U97_RS02500 Genome accession   NZ_CP090890
Coordinates   522800..523687 (+) Length   295 a.a.
NCBI ID   WP_004957789.1    Uniprot ID   -
Organism   Acinetobacter junii strain WCO-9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 517800..528687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0U97_RS02475 - 518773..519282 (-) 510 WP_004957782.1 dihydrofolate reductase -
  L0U97_RS02480 thyA 519303..520145 (-) 843 WP_004957784.1 thymidylate synthase -
  L0U97_RS02485 - 520304..520879 (-) 576 WP_004916475.1 xanthine phosphoribosyltransferase -
  L0U97_RS02490 - 520968..521684 (-) 717 WP_004916473.1 DUF3108 domain-containing protein -
  L0U97_RS02495 - 521878..522555 (-) 678 WP_234856853.1 hypothetical protein -
  L0U97_RS02500 tonB2 522800..523687 (+) 888 WP_004957789.1 energy transducer TonB Machinery gene
  L0U97_RS02505 - 523940..526090 (+) 2151 WP_234856854.1 TonB-dependent siderophore receptor -
  L0U97_RS02510 - 526155..526454 (-) 300 WP_151738755.1 antibiotic biosynthesis monooxygenase family protein -
  L0U97_RS02515 ybeY 526466..526951 (-) 486 WP_039047584.1 rRNA maturation RNase YbeY -
  L0U97_RS02520 - 527244..528317 (-) 1074 WP_234856855.1 PhoH family protein -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 33505.04 Da        Isoelectric Point: 8.3911

>NTDB_id=646191 L0U97_RS02500 WP_004957789.1 522800..523687(+) (tonB2) [Acinetobacter junii strain WCO-9]
MWNKINFRSELSSHWWQDSIFVGAVILALLLHLAVLAVQFAMPTPSDTSTKEIAVSIRPSTDKVENADFLAQADQKGSGE
FREAHRMSSDMPSPMQADATTGETEFESLEKIQQKRELKFEEKVLMTVLSWQKQAEQSERKKALEDLQSQFQAKAAMVAS
LEAQYLQRQQNFSRKQRIKTVDGIQAKQDASAAYLDKFRQKVELYGNRYYPDAAKQQRLSGEVRLMVILNSQGGIRAIRL
IESSGHSILDEAAKASVRRGAPFGAFDSTMKKDISELRIIRTWRFDPVDAEFEVH

Nucleotide


Download         Length: 888 bp        

>NTDB_id=646191 L0U97_RS02500 WP_004957789.1 522800..523687(+) (tonB2) [Acinetobacter junii strain WCO-9]
ATGTGGAATAAAATAAATTTTCGTTCGGAGTTGTCATCTCATTGGTGGCAAGACTCAATTTTTGTAGGGGCTGTGATTTT
AGCATTGCTTCTGCATTTGGCTGTGCTTGCGGTACAGTTTGCTATGCCAACTCCATCCGATACCTCCACAAAGGAAATCG
CAGTTTCTATTCGCCCTAGTACTGATAAAGTAGAAAATGCTGATTTTCTTGCTCAAGCTGATCAAAAGGGTTCAGGTGAG
TTTCGAGAAGCACATCGCATGTCGAGTGATATGCCTTCACCGATGCAGGCTGATGCGACTACTGGTGAAACTGAGTTTGA
AAGCTTAGAAAAGATTCAGCAAAAACGCGAGTTAAAATTTGAAGAAAAAGTTTTAATGACCGTATTGAGCTGGCAGAAAC
AGGCAGAACAAAGCGAGCGTAAAAAAGCCTTAGAGGATTTACAAAGTCAGTTCCAAGCAAAAGCTGCCATGGTTGCTAGT
CTTGAAGCTCAGTATTTACAACGACAACAAAATTTTAGCCGTAAACAACGGATTAAAACGGTAGATGGTATTCAAGCTAA
ACAGGATGCTTCTGCTGCGTATCTAGATAAATTCCGCCAAAAAGTTGAACTGTATGGAAATCGCTATTACCCAGATGCTG
CTAAACAACAGCGGTTATCGGGTGAAGTTAGATTAATGGTTATTCTGAACTCACAGGGTGGGATACGTGCAATTCGTTTA
ATTGAGAGTTCGGGACATTCTATTTTAGATGAAGCAGCTAAAGCTTCAGTGCGCCGTGGAGCTCCTTTTGGTGCATTTGA
TTCCACGATGAAGAAGGATATTTCTGAATTACGTATCATTCGGACTTGGCGTTTTGACCCAGTGGATGCTGAGTTTGAAG
TGCATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

76.949

100

0.769