Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   L0U97_RS01955 Genome accession   NZ_CP090890
Coordinates   418938..421163 (-) Length   741 a.a.
NCBI ID   WP_234856810.1    Uniprot ID   -
Organism   Acinetobacter junii strain WCO-9     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 413938..426163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0U97_RS01935 - 414473..414799 (-) 327 WP_004957551.1 chaperone modulator CbpM -
  L0U97_RS01940 - 414811..415755 (-) 945 WP_234856808.1 DnaJ C-terminal domain-containing protein -
  L0U97_RS01945 hslO 416088..416963 (-) 876 WP_004957557.1 Hsp33 family molecular chaperone HslO -
  L0U97_RS01950 - 417083..418903 (-) 1821 WP_234856809.1 cation:proton antiporter -
  L0U97_RS01955 priA 418938..421163 (-) 2226 WP_234856810.1 primosomal protein N' Machinery gene
  L0U97_RS01960 gspF 421364..422569 (+) 1206 WP_004957567.1 type II secretion system inner membrane protein GspF -
  L0U97_RS01965 gspG 422593..423030 (+) 438 WP_004916750.1 type II secretion system major pseudopilin GspG -
  L0U97_RS01970 - 423294..423638 (+) 345 WP_099949272.1 hypothetical protein -
  L0U97_RS01975 lnt 423693..425252 (-) 1560 WP_234856811.1 apolipoprotein N-acyltransferase -
  L0U97_RS01980 - 425249..426088 (-) 840 WP_004916742.1 HlyC/CorC family transporter -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 84127.94 Da        Isoelectric Point: 8.3990

>NTDB_id=646190 L0U97_RS01955 WP_234856810.1 418938..421163(-) (priA) [Acinetobacter junii strain WCO-9]
MPTENSNAILYRIRVALPVYVYDTFDYTVSAEQYLQAQIGARVSVSFGRQNLIGIITEKVDPNEPFTGQFKLKPITALLD
EDAILDQQVLTLLTWSAQYYQFPIGEVMQSALPALLRQGRALDILFHHWNILTHDDPESLLKRSQKQYDAYQILKLHPHG
ATENILNLSGVETATLKVLEKKGLIECQLEAHDFTPMPVQLAQMPLTPNEDQKRAIQQILKSQQRYQAFLLDGLTGSGKT
EVYLQVMHEVLKQGKQVLVLVPEIGLTPQTVARFKSRFHCDVALLHSGLNDSKRLQAWQHAQTGKASIIIGTRSAIYTPL
PHLGLIILDEEHDLSYKQQEGFRYHTRDVALYRGHLHNCPVILGSATPSIDSYYLVESGKLHLLELNQRAGTAVLPKMHV
IDLKVAKKKNGISQNLIDQIKLTLERKEQVLIFLNRRGYAPVLLCESCGWQANCPHCDAHFTVHSQPYSYLHCHHCGTIN
RLPDECPACKHQTLKSIGAGTAKVEEQLHELFPHHEVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFPH
VTLVAILDIDSGLLSVDPRAPERTAQLIIQVAGRAGRGEHKGSVYLQSLRPDHPMLTTLIEQDYRAVAKQMLSERKVAML
PPYRYAVLVRVESKDRDYSQQFLMEAAQGLRAIAADIIEIWGPIPAPMERKAGRYRAHMVILSADRAKLHFYLRQWWQQV
VHLPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=646190 L0U97_RS01955 WP_234856810.1 418938..421163(-) (priA) [Acinetobacter junii strain WCO-9]
ATGCCTACCGAAAATTCTAACGCTATTCTTTACCGTATTCGAGTTGCATTACCCGTCTATGTGTATGACACGTTTGACTA
TACGGTCAGTGCAGAGCAATACCTGCAAGCTCAAATAGGCGCACGTGTTTCTGTTTCATTTGGTCGCCAAAATCTGATCG
GTATCATTACCGAGAAAGTTGATCCAAATGAGCCGTTTACAGGGCAATTCAAACTTAAACCGATTACAGCACTTCTTGAT
GAAGATGCTATCTTAGACCAACAAGTTTTAACTTTGTTGACATGGTCTGCGCAGTATTATCAATTCCCGATTGGTGAAGT
GATGCAAAGTGCACTTCCTGCACTCTTAAGACAGGGTCGTGCTTTAGATATCTTATTTCACCACTGGAATATTCTCACGC
ATGACGATCCAGAATCTTTATTAAAACGTTCTCAAAAGCAATACGATGCCTATCAGATTCTAAAACTTCATCCACATGGC
GCTACCGAAAATATTTTAAATCTTAGTGGTGTAGAAACTGCAACATTAAAGGTATTGGAAAAAAAGGGACTGATTGAATG
TCAGCTTGAAGCTCATGACTTTACACCGATGCCTGTACAACTTGCACAAATGCCTTTAACGCCGAACGAAGATCAAAAGC
GAGCAATCCAACAAATACTCAAATCTCAACAACGTTACCAAGCCTTTTTACTAGATGGACTTACAGGCAGCGGTAAAACC
GAAGTCTATTTGCAAGTAATGCATGAGGTTCTAAAGCAAGGTAAACAAGTCTTGGTGTTGGTGCCTGAAATTGGTTTGAC
ACCTCAAACAGTCGCACGCTTCAAATCACGTTTTCATTGCGATGTTGCTTTACTACACTCGGGACTTAATGATTCAAAAC
GTTTGCAAGCTTGGCAACATGCACAAACTGGTAAAGCATCTATCATCATTGGAACGCGTTCTGCGATTTACACCCCTTTG
CCGCATCTAGGTTTGATCATTTTAGATGAAGAACACGATCTCTCTTATAAACAACAAGAGGGTTTCCGTTATCACACTCG
TGATGTCGCCCTTTATCGTGGTCATTTACACAATTGCCCTGTGATTTTGGGTTCTGCTACACCAAGTATTGATAGTTATT
ATCTAGTGGAGTCTGGTAAATTGCATTTACTTGAACTCAATCAACGTGCTGGAACTGCGGTCTTACCGAAAATGCATGTG
ATTGATCTAAAAGTAGCAAAGAAGAAAAATGGCATCAGTCAAAACCTAATTGATCAAATTAAATTAACTTTAGAGCGCAA
AGAACAGGTTCTTATCTTTCTAAACCGTCGAGGTTACGCTCCTGTTTTACTGTGTGAAAGTTGTGGGTGGCAAGCAAATT
GCCCACATTGTGATGCACATTTCACTGTACATTCACAGCCTTATTCTTATTTACACTGTCATCATTGCGGTACGATCAAT
CGCCTGCCAGACGAATGCCCTGCTTGTAAACATCAAACGTTAAAAAGCATTGGTGCTGGAACTGCAAAAGTTGAAGAACA
GTTACACGAGTTATTCCCCCATCATGAAGTAATTCGGGTAGATCGTGACAGTACAAGTCGTGTGGGTAGTTGGCAAAAAA
TCTATGATCGAATTCAACAGAATAAACCAAGCATCTTGTTAGGTACTCAAATGCTGGCGAAGGGACATCATTTCCCACAC
GTCACATTAGTCGCTATTCTGGATATAGACTCAGGATTATTAAGCGTAGACCCAAGAGCACCTGAGCGCACAGCACAATT
GATCATACAAGTTGCAGGACGTGCAGGACGTGGTGAACATAAAGGCAGCGTGTATTTACAAAGTTTAAGACCCGATCATC
CAATGCTCACAACCTTGATTGAACAAGACTATCGTGCCGTTGCAAAACAGATGCTGAGTGAACGTAAAGTTGCGATGTTG
CCGCCTTATCGTTACGCTGTTTTAGTCCGTGTGGAGTCGAAAGATCGTGATTATAGTCAACAGTTTTTAATGGAAGCAGC
ACAAGGCTTAAGAGCTATTGCAGCAGATATTATTGAAATTTGGGGACCTATTCCTGCCCCAATGGAACGCAAAGCAGGGC
GTTATCGAGCGCATATGGTGATTTTATCTGCCGACCGAGCAAAATTGCATTTTTATTTACGTCAATGGTGGCAACAAGTG
GTACATTTACCTCGCCAACATCAACTCAGATTATCAATTGATGTTGATCCACAAGAGTTTAGTTGA

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(14-113)

Primosomal protein N C-terminal domain (PriA_C)

(642-737)

DEAD/DEAH box helicase (DEAD)

(210-369)

Helicase conserved C-terminal domain (Helicase_C)

(532-598)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

81.055

99.73

0.808