Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   OG812_RS08245 Genome accession   NZ_CP107784
Coordinates   1776663..1778864 (-) Length   733 a.a.
NCBI ID   WP_329015521.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00566     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1771663..1783864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG812_RS08215 (OG812_08210) rnc 1772376..1773227 (-) 852 WP_329015530.1 ribonuclease III -
  OG812_RS08220 (OG812_08215) rpmF 1773236..1773409 (-) 174 WP_003951102.1 50S ribosomal protein L32 -
  OG812_RS08225 (OG812_08220) - 1773412..1774065 (-) 654 WP_329015528.1 DUF177 domain-containing protein -
  OG812_RS08230 (OG812_08225) - 1774202..1775311 (-) 1110 WP_330235338.1 cell division initiation protein -
  OG812_RS08235 (OG812_08230) coaD 1775418..1775927 (-) 510 WP_161147796.1 pantetheine-phosphate adenylyltransferase -
  OG812_RS08240 (OG812_08235) rsmD 1775924..1776631 (-) 708 WP_329015523.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  OG812_RS08245 (OG812_08240) recG 1776663..1778864 (-) 2202 WP_329015521.1 ATP-dependent DNA helicase RecG Machinery gene
  OG812_RS08250 (OG812_08245) - 1779070..1780911 (+) 1842 WP_330235339.1 HSP90 family protein -
  OG812_RS08255 (OG812_08250) - 1780908..1783769 (+) 2862 WP_330235340.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 79439.81 Da        Isoelectric Point: 5.8320

>NTDB_id=646186 OG812_RS08245 WP_329015521.1 1776663..1778864(-) (recG) [Streptomyces sp. NBC_00566]
MDLVPALREPLKKVLGPATAKVMAENLGLHTVGDLLHHYPRRYEERGQLTHLADLPMDEHVTVVAQVADARLHTFASARA
PRGKGQRLEVTITDGSGRLQLVFFGNGVHKPHKELLPGTRAMFSGKVSVFNRRMQLAHPAYELLDKDAEDGDEAVESWAG
SLIPIYPATAKLESWKIGKAVQTVLPSVQEAVDPLPESLREGRGLVELPEALVKIHRPATKADIADARARLKWDEAFVLQ
VALARRRYADTQLPAVPRRPLDDGLLTAFDARLPFTLTDGQQRVSEEIFTDLATAHPMHRLLQGEVGSGKTLVALRAMLA
VVDAGGQAAMLAPTEVLAQQHHRSVTEMMGALAEGGMLGGSEHGTKVVLLTGSMGAAARRQALLDIVTGEAGIVIGTHAL
IEDKVQFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIATHVVP
AADKPHFLARAWERVREEVEGGHQAYVVCPRIGDEDESAAEKKAAEGDKRPPLAVLDIADQLSRGPLQGLKVEVLHGRMH
PDDKDAVMRRFAAGETDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVSEMPEASPARQ
RLNAVASTLDGFELSRIDLEQRREGDVLGQAQSGARTSLRVLEVIEDEEIIAEAREEAAAVVAADPDLEHIPGLRTALEA
LLDEEREQYLEKG

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=646186 OG812_RS08245 WP_329015521.1 1776663..1778864(-) (recG) [Streptomyces sp. NBC_00566]
ATGGATCTCGTGCCCGCACTGCGAGAACCCCTGAAGAAGGTGCTCGGTCCCGCCACCGCGAAGGTGATGGCCGAGAACCT
CGGCCTGCACACCGTCGGCGACCTCCTGCACCACTACCCCCGCAGATACGAGGAGCGCGGCCAGCTCACCCACCTCGCCG
ACCTCCCCATGGACGAGCACGTCACCGTGGTCGCCCAGGTCGCCGACGCCCGGCTGCACACCTTCGCCTCCGCCCGCGCC
CCGCGCGGCAAGGGCCAGCGGCTCGAAGTCACCATCACCGACGGCAGCGGCCGCCTCCAACTGGTCTTCTTCGGCAACGG
CGTGCACAAGCCGCACAAGGAACTGCTGCCCGGCACCCGCGCGATGTTCTCCGGCAAGGTCTCCGTCTTCAACCGCCGCA
TGCAACTCGCCCACCCCGCGTACGAATTGCTGGACAAGGACGCCGAGGACGGCGACGAAGCGGTGGAGAGCTGGGCCGGC
TCCCTCATCCCGATCTACCCCGCCACCGCCAAGCTGGAGTCCTGGAAGATCGGCAAGGCGGTGCAGACCGTACTGCCCAG
CGTCCAGGAAGCCGTCGACCCGCTCCCCGAGTCGCTGCGCGAAGGGCGCGGCCTGGTCGAGCTGCCCGAGGCCCTGGTCA
AGATCCACCGCCCCGCCACCAAGGCCGACATCGCCGACGCCCGCGCCCGCCTCAAGTGGGACGAGGCGTTCGTCCTCCAA
GTCGCCCTCGCCCGCCGCCGCTACGCCGACACCCAGCTCCCCGCCGTCCCCCGCCGCCCCCTGGACGACGGCCTCCTGAC
CGCCTTCGACGCCCGCCTCCCCTTCACCCTCACCGACGGCCAGCAGCGCGTATCCGAGGAGATCTTCACCGACCTCGCCA
CCGCCCACCCGATGCACCGGCTGCTCCAGGGGGAGGTGGGCAGCGGAAAGACGCTGGTCGCCCTGCGCGCCATGCTCGCC
GTCGTCGACGCGGGGGGTCAGGCGGCCATGCTGGCGCCGACCGAGGTGCTCGCGCAGCAGCATCACCGGTCGGTCACCGA
GATGATGGGGGCGCTGGCCGAGGGGGGCATGCTCGGGGGCTCCGAGCACGGGACCAAGGTGGTGCTGCTGACCGGGTCGA
TGGGGGCCGCCGCCCGCCGTCAGGCCCTGCTGGACATCGTCACCGGTGAGGCGGGCATCGTCATCGGCACCCACGCCCTC
ATCGAGGACAAGGTCCAGTTCCACGACCTCGGCCTGGTCGTCGTGGACGAACAGCACCGGTTCGGCGTCGAGCAGCGCGA
CGCCCTGCGCGGCAAGGGCAAGCAGCCCCCGCACCTGCTCGTCATGACGGCCACCCCGATCCCGCGCACGGTCGCGATGA
CGGTCTTCGGCGACCTGGAGACCTCGGTCCTGGACCAGCTCCCGGCCGGCCGTTCACCGATCGCCACCCATGTCGTCCCG
GCCGCCGACAAGCCGCACTTCCTCGCCCGCGCGTGGGAGCGCGTCCGCGAGGAGGTGGAGGGTGGCCACCAGGCGTACGT
CGTCTGCCCCCGCATCGGCGACGAGGACGAGAGCGCCGCCGAGAAGAAGGCCGCCGAGGGCGACAAACGCCCCCCGCTCG
CCGTCCTCGACATCGCGGACCAGTTGAGCCGGGGCCCGCTCCAGGGCCTCAAGGTGGAGGTGCTGCACGGCAGGATGCAC
CCCGACGACAAGGACGCCGTGATGCGCCGCTTCGCAGCGGGCGAGACGGACGTCCTGGTCGCCACCACCGTCATCGAGGT
CGGCGTGAACGTCCCCAACGCCACCGCGATGGTCATCATGGACGCCGACCGCTTCGGCGTCTCCCAGCTCCACCAGTTGC
GCGGCCGCGTCGGCCGAGGCTCGGCCCCCGGCCTGTGCCTGCTGGTCAGCGAGATGCCCGAGGCCAGCCCCGCCCGCCAG
CGGCTGAACGCGGTCGCCTCCACCCTCGACGGCTTCGAGCTCTCCCGCATCGACCTCGAACAGCGCCGCGAGGGCGACGT
CCTCGGCCAGGCCCAGTCCGGCGCCCGCACCAGCCTCCGCGTCCTGGAGGTCATCGAGGACGAGGAGATCATCGCGGAGG
CACGGGAGGAAGCGGCGGCGGTGGTCGCGGCGGACCCGGACCTGGAGCACATCCCCGGCCTGCGCACCGCCCTGGAAGCC
CTCCTGGACGAGGAGAGGGAGCAGTACCTGGAAAAGGGCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(543-620)

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(61-144)

DEAD/DEAH box helicase (DEAD)

(298-451)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(648-709)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

39.088

98.772

0.386
  recG/mmsA Streptococcus pneumoniae R6

37.892

95.771

0.363
  recG/mmsA Streptococcus pneumoniae R36A

37.892

95.771

0.363
  recG Bacillus subtilis subsp. subtilis str. 168

38.184

94.679

0.362