Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   L0U97_RS01460 Genome accession   NZ_CP090890
Coordinates   307947..308273 (+) Length   108 a.a.
NCBI ID   WP_004958548.1    Uniprot ID   A0A8I0S2H5
Organism   Acinetobacter junii strain WCO-9     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 302947..313273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0U97_RS01435 hemC 303402..304319 (+) 918 WP_099949318.1 hydroxymethylbilane synthase -
  L0U97_RS01440 - 304321..305097 (+) 777 WP_234856771.1 uroporphyrinogen-III synthase -
  L0U97_RS01445 - 305094..305924 (+) 831 WP_234856772.1 hypothetical protein -
  L0U97_RS01450 - 305931..307124 (+) 1194 WP_234856773.1 heme biosynthesis protein HemY -
  L0U97_RS01455 - 307133..307564 (+) 432 WP_234856774.1 acyl-CoA thioesterase -
  L0U97_RS01460 hns 307947..308273 (+) 327 WP_004958548.1 H-NS family nucleoid-associated regulatory protein Regulator
  L0U97_RS01465 gspN 308454..309197 (+) 744 WP_005403545.1 type II secretion system protein N -
  L0U97_RS01470 - 309197..310045 (+) 849 WP_004957388.1 type II secretion system protein N -
  L0U97_RS01475 gspD 310087..312342 (+) 2256 WP_234856775.1 type II secretion system secretin GspD -
  L0U97_RS01480 - 312406..313017 (+) 612 WP_234856776.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12343.00 Da        Isoelectric Point: 5.0355

>NTDB_id=646186 L0U97_RS01460 WP_004958548.1 307947..308273(+) (hns) [Acinetobacter junii strain WCO-9]
MKPDISDLSVEDLKRLQAEAEALIASKKDQAIEDAYNQIIAIAENVGYSVEELLELGEQKRKKTTRKAVEPRYRNKNNAE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=646186 L0U97_RS01460 WP_004958548.1 307947..308273(+) (hns) [Acinetobacter junii strain WCO-9]
ATGAAACCAGATATTAGTGATTTATCTGTTGAAGATCTCAAGCGTTTGCAAGCTGAAGCTGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATTGAAGATGCTTATAATCAAATTATTGCGATTGCTGAAAACGTTGGATACAGCGTCGAAGAGCTTT
TGGAGCTTGGTGAGCAAAAGCGTAAGAAAACAACCCGTAAAGCTGTTGAGCCGCGTTACCGTAATAAAAATAATGCAGAA
GAAACTTGGACAGGTCGCGGTAAGCAACCACGTTGGTTAGTTGCAGAATTAGAGAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(13-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

90.741

100

0.907