Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   L0U97_RS00960 Genome accession   NZ_CP090890
Coordinates   199505..200656 (-) Length   383 a.a.
NCBI ID   WP_234856739.1    Uniprot ID   -
Organism   Acinetobacter junii strain WCO-9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 194505..205656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0U97_RS00940 - 195677..196342 (+) 666 WP_234856738.1 TetR/AcrR family transcriptional regulator -
  L0U97_RS00945 - 196446..197366 (+) 921 WP_125297937.1 DMT family transporter -
  L0U97_RS00950 - 197761..198330 (-) 570 WP_005403957.1 Sua5/YciO/YrdC/YwlC family protein -
  L0U97_RS00955 dprA 198368..199495 (-) 1128 WP_204379131.1 DNA-processing protein DprA Machinery gene
  L0U97_RS00960 tsaP 199505..200656 (-) 1152 WP_234856739.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  L0U97_RS00965 def 200777..201307 (+) 531 WP_004905508.1 peptide deformylase -
  L0U97_RS00970 - 201329..201766 (+) 438 WP_039048136.1 DUF2946 family protein -
  L0U97_RS00975 - 201840..203936 (+) 2097 WP_234856740.1 TonB-dependent copper receptor -
  L0U97_RS00980 - 203983..204744 (-) 762 WP_004905498.1 hypothetical protein -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 41838.96 Da        Isoelectric Point: 9.0751

>NTDB_id=646181 L0U97_RS00960 WP_234856739.1 199505..200656(-) (tsaP) [Acinetobacter junii strain WCO-9]
MKKVLNGIHSFHALGLKKQLIAVAICAGLGMTVNITHAASPNVSPPSVKAGAPHVYVVKKGDTLWDISGKFLSKPWRWPE
IWASNKHVKNPHWIYPGDRLLLCSLNGKPLIGKDEGDGCDGIIRRYTGGGTTLRPQVRIEALNNSVPVIPLAHIQQWLER
SSVLPADAIANTPYILGTADNRVLAGKGQSVYVRGQGLENGQRYGVYREGEPYIVVDEQGKKQNLGVELLQVASGVAVRN
ENDITTVELTDSYNGEVRRGDRVMLEQEAMLPTLFYPIDAKQVRDGGKVIRVLGSIGTAAKNGVVTVDRGTADGVEIGQV
FSTYHEGEIVQDPKTKEKVKLPGQYVGSLMIFKSFDRISYAYVLESELPIKVGSNIQPPRLDD

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=646181 L0U97_RS00960 WP_234856739.1 199505..200656(-) (tsaP) [Acinetobacter junii strain WCO-9]
ATGAAAAAGGTTTTAAACGGCATACACTCATTTCATGCCTTGGGGTTAAAAAAACAACTGATTGCTGTTGCCATCTGTGC
AGGATTAGGCATGACGGTAAATATAACGCATGCAGCAAGCCCTAATGTTAGCCCACCCTCTGTCAAAGCTGGGGCACCAC
ATGTCTATGTAGTGAAAAAAGGCGATACCCTTTGGGATATCTCAGGCAAGTTTTTAAGTAAACCATGGCGCTGGCCAGAA
ATTTGGGCAAGCAATAAACACGTTAAGAATCCTCACTGGATTTATCCAGGTGACCGCTTACTACTCTGTAGTTTGAATGG
CAAACCGTTAATCGGTAAAGATGAAGGTGACGGCTGTGACGGTATTATTCGTCGTTATACAGGTGGCGGAACAACTTTAC
GTCCGCAAGTACGTATCGAAGCATTGAACAATAGTGTGCCTGTTATTCCATTGGCTCATATTCAACAATGGTTAGAACGT
AGTTCAGTATTACCAGCGGATGCGATTGCGAATACCCCTTATATCTTAGGCACAGCTGACAATCGCGTGCTTGCAGGCAA
AGGACAAAGTGTTTACGTCCGTGGTCAAGGTCTAGAAAATGGTCAGCGTTATGGCGTTTACCGTGAAGGTGAACCTTACA
TCGTTGTTGATGAGCAAGGCAAAAAGCAAAACCTAGGTGTTGAATTACTTCAAGTCGCATCTGGTGTTGCTGTGCGCAAT
GAAAACGACATTACTACGGTTGAACTCACTGATAGCTATAACGGCGAAGTTCGTCGTGGTGATCGCGTGATGCTTGAACA
AGAGGCAATGTTGCCAACCTTGTTCTATCCTATCGATGCAAAACAAGTGCGCGATGGCGGTAAAGTGATTCGTGTATTAG
GATCGATTGGTACAGCCGCTAAAAATGGTGTTGTCACTGTTGATCGTGGTACTGCTGATGGCGTTGAAATTGGTCAAGTC
TTTAGCACCTACCACGAGGGTGAAATCGTACAAGATCCAAAAACTAAAGAGAAAGTTAAATTACCTGGACAATATGTGGG
TAGCTTGATGATCTTCAAGAGTTTTGATCGTATCAGCTATGCCTACGTTTTAGAAAGTGAACTGCCAATCAAAGTTGGTT
CAAACATCCAACCACCACGCTTGGATGACTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(56-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

72.656

100

0.728