Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG812_RS06690 Genome accession   NZ_CP107784
Coordinates   1430349..1431020 (+) Length   223 a.a.
NCBI ID   WP_030804122.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00566     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1425349..1436020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG812_RS06675 (OG812_06680) - 1426176..1426490 (+) 315 Protein_1328 TerB family tellurite resistance protein -
  OG812_RS06680 (OG812_06685) - 1426714..1428834 (+) 2121 WP_330235204.1 MMPL family transporter -
  OG812_RS06685 (OG812_06690) - 1429081..1430352 (+) 1272 WP_330235205.1 histidine kinase -
  OG812_RS06690 (OG812_06695) vraR 1430349..1431020 (+) 672 WP_030804122.1 response regulator transcription factor Regulator
  OG812_RS06695 (OG812_06700) - 1431103..1431364 (-) 262 Protein_1332 transposase -
  OG812_RS06700 (OG812_06705) - 1431358..1431660 (-) 303 Protein_1333 pyridoxamine 5'-phosphate oxidase family protein -
  OG812_RS06705 (OG812_06710) - 1431673..1432401 (-) 729 WP_329016170.1 DUF2071 domain-containing protein -
  OG812_RS06710 (OG812_06715) - 1432440..1433159 (-) 720 WP_329016168.1 SDR family NAD(P)-dependent oxidoreductase -
  OG812_RS06715 (OG812_06720) - 1433563..1433838 (-) 276 WP_330235206.1 DUF3253 domain-containing protein -
  OG812_RS06720 (OG812_06725) - 1434431..1434778 (+) 348 WP_329016162.1 MerR family transcriptional regulator -
  OG812_RS06725 (OG812_06730) - 1434879..1435238 (+) 360 WP_217464908.1 hypothetical protein -
  OG812_RS06730 (OG812_06735) - 1435256..1435576 (-) 321 WP_330235207.1 SCO5918 family protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 23379.94 Da        Isoelectric Point: 4.7913

>NTDB_id=646178 OG812_RS06690 WP_030804122.1 1430349..1431020(+) (vraR) [Streptomyces sp. NBC_00566]
MTIRVLLADDQNLVRASFAMLVSSAGDMEVVAEAGTGREAVALARSARADLIVMDIRMPDLDGIEATRLIAADEDLAGVK
VLVLTTYETDEYIVEALRAGASGFLVKDIRPAELLDAIRTVAAGESLLSPGPTSRLIARFLRAPNTATTSAVGGPSGLSE
RERQVLALVARGLNNSEIADALGLSPLTAKTHVSRMMGKLGARDRAQLVIVAYESGLVIPGTA

Nucleotide


Download         Length: 672 bp        

>NTDB_id=646178 OG812_RS06690 WP_030804122.1 1430349..1431020(+) (vraR) [Streptomyces sp. NBC_00566]
ATGACCATCCGCGTACTGCTGGCCGACGACCAGAACCTCGTACGGGCCTCCTTCGCGATGCTCGTCTCGTCGGCCGGGGA
CATGGAGGTCGTCGCCGAGGCGGGCACCGGGCGGGAGGCCGTGGCGCTGGCCCGGTCGGCGCGGGCCGATCTCATCGTGA
TGGACATCCGCATGCCCGACCTCGACGGGATCGAGGCGACCCGGCTCATCGCCGCCGACGAGGATCTCGCGGGGGTGAAG
GTGCTCGTCCTGACGACGTACGAGACCGACGAGTACATCGTCGAGGCACTGCGGGCCGGGGCGTCCGGCTTCCTCGTGAA
GGACATCAGGCCGGCCGAACTCCTCGACGCCATCCGGACGGTGGCCGCAGGGGAGTCCCTCCTCTCGCCCGGTCCCACCT
CGCGGCTGATCGCCCGCTTTCTGCGCGCGCCGAACACCGCGACGACATCCGCAGTGGGCGGGCCGAGCGGGCTGTCCGAA
CGGGAACGGCAGGTACTCGCGCTGGTCGCGCGCGGTCTCAACAACTCCGAGATCGCCGACGCGTTGGGACTCAGCCCGCT
GACCGCCAAGACCCATGTCAGCCGGATGATGGGCAAGTTGGGGGCGCGGGACCGGGCACAGCTGGTGATCGTGGCGTACG
AGTCGGGGCTTGTGATACCCGGGACTGCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(158-212)

Response regulator receiver domain (Response_reg)

(5-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.615

97.758

0.368