Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHO83_RS34340 Genome accession   NZ_CP107783
Coordinates   7633837..7634499 (-) Length   220 a.a.
NCBI ID   WP_329435884.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00569     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7628837..7639499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHO83_RS34305 (OHO83_34330) - 7629021..7629731 (-) 711 WP_330280222.1 winged helix-turn-helix domain-containing protein -
  OHO83_RS34310 (OHO83_34335) - 7629775..7630422 (-) 648 WP_266668804.1 TetR/AcrR family transcriptional regulator -
  OHO83_RS34315 (OHO83_34340) - 7630502..7631653 (+) 1152 WP_266668802.1 acyl-CoA dehydrogenase family protein -
  OHO83_RS34320 (OHO83_34345) - 7631755..7632045 (+) 291 WP_266668801.1 YiaA/YiaB family inner membrane protein -
  OHO83_RS34325 (OHO83_34350) - 7632120..7632758 (+) 639 WP_266668800.1 TetR/AcrR family transcriptional regulator -
  OHO83_RS34330 (OHO83_34355) - 7632771..7633232 (-) 462 WP_330280223.1 MaoC family dehydratase -
  OHO83_RS34335 (OHO83_34360) soxR 7633358..7633825 (+) 468 WP_266668799.1 redox-sensitive transcriptional activator SoxR -
  OHO83_RS34340 (OHO83_34365) vraR 7633837..7634499 (-) 663 WP_329435884.1 response regulator transcription factor Regulator
  OHO83_RS34345 (OHO83_34370) - 7634496..7635722 (-) 1227 WP_330280224.1 sensor histidine kinase -
  OHO83_RS34350 (OHO83_34375) - 7635856..7636794 (+) 939 WP_266668793.1 ABC transporter ATP-binding protein -
  OHO83_RS34355 (OHO83_34380) - 7636791..7637642 (+) 852 WP_266668791.1 ABC transporter permease -
  OHO83_RS34360 (OHO83_34385) - 7637748..7638260 (+) 513 WP_330280225.1 hypothetical protein -
  OHO83_RS34365 (OHO83_34390) - 7638338..7638940 (-) 603 WP_266668787.1 hypothetical protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23426.98 Da        Isoelectric Point: 4.8359

>NTDB_id=646154 OHO83_RS34340 WP_329435884.1 7633837..7634499(-) (vraR) [Streptomyces sp. NBC_00569]
MTVRVVLADDQPLVRSGLRVLIADTPDLEVVGEAANGEEAVRLAREVRPDVIVMDIRMPGMNGIEATSLVTSGPGAARVL
ILTTFDEDDHVYGALRAGASGFAVKDMALDDILAAIRVVAAGDALIAPGITRRLIADFVGRPEPSPARAPRPVEGITERE
REVLTLVGLGRSNSEIADELYITVATTKSHVARLFTKLGARDRVQLVIIAYESGLVSAPR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=646154 OHO83_RS34340 WP_329435884.1 7633837..7634499(-) (vraR) [Streptomyces sp. NBC_00569]
ATGACCGTGCGCGTGGTGCTCGCCGACGACCAGCCGCTCGTACGCTCCGGGCTGCGCGTCCTCATCGCCGACACCCCCGA
TCTGGAGGTCGTCGGGGAGGCCGCGAACGGCGAGGAGGCCGTCCGGCTGGCGAGGGAGGTCAGGCCCGATGTGATCGTGA
TGGACATCCGGATGCCGGGCATGAACGGGATCGAGGCCACGAGCCTGGTCACCTCGGGCCCGGGGGCGGCCCGTGTGCTG
ATCCTGACGACCTTCGACGAGGACGACCACGTCTACGGCGCGCTGCGCGCCGGCGCGAGCGGCTTCGCGGTCAAGGACAT
GGCGCTCGACGACATCCTCGCCGCGATCCGGGTCGTCGCCGCCGGGGACGCGCTGATCGCGCCGGGCATCACGCGGCGCC
TCATCGCGGACTTCGTCGGCCGCCCCGAGCCGTCGCCCGCCCGCGCGCCGCGCCCGGTCGAGGGCATCACCGAGCGGGAG
CGCGAGGTGCTGACGCTGGTGGGGCTCGGCCGGTCGAACAGCGAGATCGCCGACGAGCTGTACATCACCGTGGCCACGAC
CAAGTCGCACGTGGCGCGCCTGTTCACCAAACTGGGCGCCCGGGACCGGGTCCAACTCGTCATCATCGCCTACGAGTCGG
GGCTGGTCTCCGCGCCCCGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.788

98.636

0.373