Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   L1A13_RS09050 Genome accession   NZ_CP090889
Coordinates   1745555..1746586 (-) Length   343 a.a.
NCBI ID   WP_000506424.1    Uniprot ID   A0A0B7LYB2
Organism   Streptococcus pneumoniae strain CH2439     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1740555..1751586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1A13_RS09000 (L1A13_09000) - 1740692..1741453 (-) 762 WP_001107751.1 SDR family NAD(P)-dependent oxidoreductase -
  L1A13_RS09005 (L1A13_09005) ytpR 1741495..1742121 (-) 627 WP_000578286.1 YtpR family tRNA-binding protein -
  L1A13_RS09010 (L1A13_09010) - 1742137..1742454 (-) 318 WP_000615770.1 thioredoxin family protein -
  L1A13_RS09015 (L1A13_09015) - 1742451..1742750 (-) 300 WP_001013974.1 DUF4651 domain-containing protein -
  L1A13_RS09020 (L1A13_09020) - 1742948..1743028 (-) 81 WP_223200442.1 hypothetical protein -
  L1A13_RS09025 (L1A13_09025) - 1743035..1743226 (-) 192 WP_000122504.1 hypothetical protein -
  L1A13_RS09030 (L1A13_09030) - 1743387..1744061 (-) 675 WP_000725749.1 membrane protein -
  L1A13_RS09035 (L1A13_09035) - 1744067..1744513 (-) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  L1A13_RS09040 (L1A13_09040) - 1744627..1745130 (-) 504 WP_000800942.1 phosphatase PAP2 family protein -
  L1A13_RS09045 (L1A13_09045) - 1745127..1745489 (-) 363 WP_000078808.1 DUF2200 family protein -
  L1A13_RS09050 (L1A13_09050) rcrQ 1745555..1746586 (-) 1032 WP_000506424.1 ATP-binding cassette domain-containing protein Regulator
  L1A13_RS09055 (L1A13_09055) - 1746593..1747414 (-) 822 Protein_1774 ABC transporter permease -
  L1A13_RS09060 (L1A13_09060) - 1747431..1747902 (-) 472 Protein_1775 MarR family winged helix-turn-helix transcriptional regulator -
  L1A13_RS09065 (L1A13_09065) - 1748026..1748742 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  L1A13_RS09070 (L1A13_09070) ply 1749623..1751038 (-) 1416 WP_001284361.1 cholesterol-dependent cytolysin pneumolysin -
  L1A13_RS09075 (L1A13_09075) - 1751049..1751459 (-) 411 WP_000595757.1 hypothetical protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37918.12 Da        Isoelectric Point: 4.4764

>NTDB_id=646152 L1A13_RS09050 WP_000506424.1 1745555..1746586(-) (rcrQ) [Streptococcus pneumoniae strain CH2439]
MGFLLMGALFIVLPRTMVSAKRINQVLDLHSSIQNPVQVQLTDENFKGQVEFKDVTFRYAANSEAVIEHVSFKAETGQTV
AFIGSTGSGKSTLVNLIPRFYDVSAGEILVDGVNVQDYDFSATAHAGQKVAIVGPTGTGKTTIVNLLMKFYEIDKGSIHI
DGVDTKAMTRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQIGISDERMMEASKAVGIHHFIMTLPDGYDTILDDTVTLSVG
QKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGNYEE
LMAQGGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=646152 L1A13_RS09050 WP_000506424.1 1745555..1746586(-) (rcrQ) [Streptococcus pneumoniae strain CH2439]
ATGGGCTTCCTTCTCATGGGAGCACTCTTCATCGTTCTTCCCCGAACTATGGTCTCTGCTAAGCGGATTAATCAAGTTTT
AGATTTGCATTCTTCTATCCAAAACCCTGTTCAAGTGCAGCTGACTGATGAAAACTTCAAAGGTCAGGTCGAGTTTAAGG
ATGTGACCTTCCGCTATGCGGCAAATTCGGAGGCAGTTATTGAACATGTTAGCTTTAAAGCAGAAACTGGTCAAACAGTG
GCCTTTATTGGGTCAACAGGTTCTGGTAAATCAACTCTGGTCAATCTGATTCCACGTTTCTACGACGTGTCAGCAGGAGA
AATTCTGGTGGACGGTGTCAATGTTCAAGACTATGACTTCTCTGCGACAGCTCATGCTGGTCAAAAGGTTGCCATTGTTG
GGCCGACTGGGACTGGTAAGACAACCATTGTCAATCTTTTGATGAAATTCTATGAGATTGATAAGGGAAGTATTCACATT
GATGGTGTGGATACCAAGGCTATGACGCGTTCAGAAGTGCATGATGCCTTTTCAATGGTCTTGCAGGATACCTGGCTCTT
TGAAGGAACTATTCGAGACAATCTCATCTATAATCAAATAGGGATTAGTGATGAACGAATGATGGAAGCTAGTAAGGCTG
TGGGAATTCACCACTTTATTATGACCTTGCCAGATGGCTATGATACCATCTTGGATGACACCGTGACCTTGTCTGTAGGA
CAAAAACAACTATTGACTATTGCTCGTGCCCTTCTTAAGGATGCACCGCTTTTGATTTTGGATGAGGCGACTTCTTCTGT
TGACACACGGACAGAGGAATTGATCCAAAAAGCCATGGACCGTTTGATGGAAGGACGCACATCCTTTGTCATTGCCCACC
GCTTGTCAACCATCCGAAATGCAGACTTGATCTTGGTCATGAAAGATGGAAATATCATCGAGCAAGGCAACTATGAGGAA
CTGATGGCGCAAGGTGGCTTCTACGCTGACTTGTACAATAGTCAATTTACAGAAGATGAAGCAGAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(120-265)

ABC transporter (ABC_tran)

(68-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B7LYB2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

80.804

65.306

0.528
  rcrP Streptococcus mutans UA159

37.861

100

0.382