Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   OHO83_RS23395 Genome accession   NZ_CP107783
Coordinates   5199407..5200531 (-) Length   374 a.a.
NCBI ID   WP_330279769.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00569     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5194407..5205531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHO83_RS23385 (OHO83_23400) gyrB 5196495..5198594 (-) 2100 WP_323186895.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  OHO83_RS23390 (OHO83_23405) - 5198868..5199410 (-) 543 WP_116512070.1 DciA family protein -
  OHO83_RS23395 (OHO83_23410) recF 5199407..5200531 (-) 1125 WP_330279769.1 DNA replication/repair protein RecF Machinery gene
  OHO83_RS23400 (OHO83_23415) gnd 5200635..5201510 (-) 876 WP_330279770.1 decarboxylating 6-phosphogluconate dehydrogenase -
  OHO83_RS23405 (OHO83_23420) dnaN 5201688..5202818 (-) 1131 WP_266672359.1 DNA polymerase III subunit beta -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40942.62 Da        Isoelectric Point: 6.7125

>NTDB_id=646131 OHO83_RS23395 WP_330279769.1 5199407..5200531(-) (recF) [Streptomyces sp. NBC_00569]
MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPLVRMGAERAVIRAAVRQGERQ
QLIELELNPGKANRARINRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYDRVLKQ
RNTLLKSAALARRHGGRSMDLSTLDVWDQHLARVGAELLAQRFDLIATLQPLADKAYEQLAPGGGPLALEYKPSSPEIDG
HAREELYEQLMAALEAARKQEIERGVTLVGPHRDDLVLKLGQLPAKGYASHGESWSYALALRLASYDLLRAEGNEPVLVL
DDVFAELDARRRERLAELVAPGEQVLVTAAVDDDVPGVLAGARYTVSDGTVERI

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=646131 OHO83_RS23395 WP_330279769.1 5199407..5200531(-) (recF) [Streptomyces sp. NBC_00569]
ATGCACGTGACGCATCTGTCGCTGGCCGACTTCCGCTCGTACGCCCGGGTCGAGGTCCCTCTCGATCCGGGCGTCACCGC
GTTCGTGGGCCCGAACGGGCAGGGCAAGACCAACCTCGTCGAGGCCGTCGGCTATCTCGCCACCCTCGGCAGCCACCGGG
TCTCCTCGGACGCGCCGCTGGTCCGCATGGGCGCCGAGCGCGCCGTCATCCGGGCCGCGGTCCGGCAGGGCGAGCGACAG
CAGCTCATCGAGCTCGAACTCAACCCGGGCAAGGCGAACCGCGCCAGGATCAACCGGTCCTCGCAGGTCAGACCCCGTGA
TGTGCTCGGCATCGTGCGCACGGTCCTGTTCGCGCCGGAGGACCTCGCGCTCGTCAAGGGCGACCCCGGCGAGCGCCGCC
GCTTTCTCGACGAGCTGATCACGGCCCGCTCCCCGCGCATGGCCGGTGTCCGGTCCGACTACGACCGCGTGCTCAAGCAG
CGCAACACGCTCCTCAAGTCGGCCGCGCTCGCCCGCAGGCACGGCGGCCGGTCCATGGACCTGTCGACCCTCGACGTGTG
GGACCAGCACCTCGCGCGCGTGGGCGCCGAGCTGCTCGCGCAGCGGTTCGACCTGATAGCCACGCTCCAGCCGCTCGCCG
ACAAGGCGTACGAACAGCTGGCGCCCGGCGGCGGCCCGCTCGCTCTGGAATACAAGCCGTCCTCGCCCGAAATCGACGGC
CACGCGCGCGAAGAGCTCTACGAGCAGCTGATGGCCGCCCTCGAAGCGGCCCGCAAACAGGAGATCGAGCGGGGCGTGAC
CCTCGTCGGACCGCACCGCGACGACCTGGTCCTCAAGCTCGGCCAGCTGCCGGCGAAGGGGTACGCCAGCCATGGCGAGT
CCTGGTCGTACGCGCTGGCGCTGCGCCTGGCCTCCTACGACCTGCTGCGGGCCGAGGGGAACGAGCCGGTGCTCGTGCTC
GACGATGTCTTCGCGGAGCTCGACGCGCGGCGCAGGGAGCGTCTCGCCGAGCTGGTCGCCCCCGGCGAGCAGGTCCTGGT
GACGGCCGCGGTGGACGACGACGTGCCGGGTGTCCTGGCGGGCGCACGGTACACGGTGTCCGACGGCACGGTGGAGCGGA
TATGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.921

95.187

0.361