Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   L1A13_RS02940 Genome accession   NZ_CP090889
Coordinates   559517..559783 (+) Length   88 a.a.
NCBI ID   WP_001808618.1    Uniprot ID   A0A0E9GZQ4
Organism   Streptococcus pneumoniae strain CH2439     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 558988..559212 559517..559783 flank 305


Gene organization within MGE regions


Location: 558988..559783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1A13_RS02935 (L1A13_02935) - 558988..559391 (+) 404 Protein_567 helix-turn-helix domain-containing protein -
  L1A13_RS02940 (L1A13_02940) HI0659 559517..559783 (+) 267 WP_001808618.1 helix-turn-helix transcriptional regulator Machinery gene

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9622.15 Da        Isoelectric Point: 4.4893

>NTDB_id=646121 L1A13_RS02940 WP_001808618.1 559517..559783(+) (HI0659) [Streptococcus pneumoniae strain CH2439]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGKTSPQLDTVLKVLASLGKTLAI
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=646121 L1A13_RS02940 WP_001808618.1 559517..559783(+) (HI0659) [Streptococcus pneumoniae strain CH2439]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAAAGACTAGTCCTCAGTTGGATACAGTCTTAAAAGTCCTAGCCAGTTTAGGAAAGACACTAGCAATC
GTCCCACTTGAACAGGGAAAAAGTTGA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E9GZQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

61.039

87.5

0.534