Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OHO83_RS12330 Genome accession   NZ_CP107783
Coordinates   2723838..2724869 (-) Length   343 a.a.
NCBI ID   WP_329433478.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00569     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2718838..2729869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHO83_RS12315 (OHO83_12335) - 2719959..2720810 (-) 852 WP_330279443.1 inositol monophosphatase family protein -
  OHO83_RS12320 (OHO83_12340) - 2720931..2722775 (-) 1845 WP_330279444.1 gamma-glutamyltransferase -
  OHO83_RS12325 (OHO83_12345) - 2722795..2723841 (-) 1047 WP_266675303.1 oligopeptide/dipeptide ABC transporter ATP-binding protein -
  OHO83_RS12330 (OHO83_12350) amiE 2723838..2724869 (-) 1032 WP_329433478.1 ABC transporter ATP-binding protein Regulator
  OHO83_RS12335 (OHO83_12355) - 2724866..2725687 (-) 822 WP_266676758.1 ABC transporter permease -
  OHO83_RS12340 (OHO83_12360) - 2725741..2726694 (-) 954 WP_323136394.1 ABC transporter permease -
  OHO83_RS12345 (OHO83_12365) - 2726751..2728322 (-) 1572 WP_323186951.1 ABC transporter substrate-binding protein -
  OHO83_RS12350 (OHO83_12370) - 2728648..2729508 (+) 861 WP_266675300.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 36283.51 Da        Isoelectric Point: 5.8260

>NTDB_id=646095 OHO83_RS12330 WP_329433478.1 2723838..2724869(-) (amiE) [Streptomyces sp. NBC_00569]
MSPNPEAVLSVRDLSVSFRTDARTVHAVDHVSYDLAAGEVLAVVGESGCGKSVTSMAVMGLLPPTAHITGSIRLGTRELA
GGDDKAYGKIRGKDIAMIFQEPMTSLNPVLTIGRQIGEVLRRHQGLNKKDARARAVELLDLVGIPAPAQRVDEYPHQLSG
GMRQRVMIAIAVACDPAVLIADEPTTALDVTVQAGILEVLQSLRERLGTAIVLITHDLGVVADIADRVLVMYAGRPVEQA
PVDELFAAPRHPYTRGLLSAVLQPGASAAADGGGKRRLPEIPGLVPSLDSQPDACTFAPRCARADERCTTARPGFESVTE
DAGDGAPHLTACWHPNTLQEAAQ

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=646095 OHO83_RS12330 WP_329433478.1 2723838..2724869(-) (amiE) [Streptomyces sp. NBC_00569]
ATGAGCCCGAACCCCGAAGCCGTGCTCAGCGTCCGTGACCTGTCGGTCTCGTTCCGCACCGACGCCCGCACCGTCCACGC
CGTCGACCACGTCTCGTACGACCTCGCGGCCGGTGAAGTCCTCGCCGTGGTGGGCGAGTCGGGCTGCGGCAAGTCCGTCA
CCTCCATGGCCGTCATGGGCCTGCTCCCGCCCACCGCGCACATCACCGGGTCGATCAGGCTCGGGACACGCGAACTCGCG
GGCGGCGACGACAAGGCGTACGGGAAGATCCGCGGCAAGGACATCGCGATGATCTTCCAGGAGCCGATGACCTCCCTGAA
CCCGGTCCTCACCATCGGCCGGCAGATCGGCGAGGTGCTCCGCCGCCACCAGGGCCTGAACAAGAAGGACGCACGCGCGC
GTGCCGTCGAACTCCTCGACCTCGTGGGCATCCCCGCCCCGGCCCAGCGCGTCGACGAGTACCCGCACCAGCTCTCCGGC
GGTATGCGCCAACGCGTGATGATCGCCATCGCGGTCGCCTGCGACCCGGCCGTCCTCATCGCCGACGAGCCGACCACCGC
CCTCGACGTCACCGTGCAGGCAGGCATCCTGGAGGTCCTCCAGTCGCTGCGCGAACGCCTCGGCACGGCGATCGTCCTCA
TCACGCACGACCTCGGCGTCGTCGCCGACATCGCCGACCGCGTCCTCGTCATGTACGCGGGCCGGCCCGTCGAACAGGCC
CCCGTGGACGAACTGTTCGCGGCGCCCCGCCACCCGTACACCCGCGGACTCCTCTCGGCGGTCCTGCAGCCCGGCGCCTC
GGCCGCCGCGGACGGGGGCGGCAAGCGGCGCCTGCCCGAGATCCCCGGCCTCGTGCCGAGCCTCGACTCCCAGCCCGACG
CCTGCACCTTCGCCCCGCGCTGCGCCCGCGCCGACGAGCGGTGCACGACGGCCAGGCCCGGCTTCGAGTCCGTCACCGAG
GACGCCGGAGACGGCGCCCCGCACCTGACCGCCTGCTGGCACCCGAACACCCTCCAGGAGGCCGCACAGTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(237-308)

ABC transporter (ABC_tran)

(29-185)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

50.327

89.213

0.449
  amiE Streptococcus thermophilus LMD-9

50.327

89.213

0.449
  amiE Streptococcus salivarius strain HSISS4

49.673

89.213

0.443
  oppD Streptococcus mutans UA159

46.037

95.627

0.44