Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG734_RS45595 Genome accession   NZ_CP107780
Coordinates   10455367..10456422 (+) Length   351 a.a.
NCBI ID   WP_330293260.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00576     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 10450367..10461422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG734_RS45575 (OG734_45630) - 10451022..10451573 (-) 552 WP_330293257.1 AAA family ATPase -
  OG734_RS45580 (OG734_45635) - 10451612..10451998 (-) 387 WP_330294026.1 MerR family transcriptional regulator -
  OG734_RS45585 (OG734_45640) - 10452050..10453084 (-) 1035 WP_330293258.1 NADP-dependent oxidoreductase -
  OG734_RS45590 (OG734_45645) - 10453661..10455007 (-) 1347 WP_330293259.1 jacalin-like lectin -
  OG734_RS45595 (OG734_45650) cytR 10455367..10456422 (+) 1056 WP_330293260.1 LacI family DNA-binding transcriptional regulator Regulator
  OG734_RS45600 (OG734_45655) - 10456484..10458244 (-) 1761 WP_330293261.1 cellulase family glycosylhydrolase -
  OG734_RS45605 (OG734_45660) - 10458357..10459871 (-) 1515 WP_330293262.1 glycoside hydrolase family 43 protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 38053.28 Da        Isoelectric Point: 5.5126

>NTDB_id=646084 OG734_RS45595 WP_330293260.1 10455367..10456422(+) (cytR) [Streptomyces sp. NBC_00576]
MPDSRSDRPSTDATEERSTRGEGPAAVTIAYIAESAGVSVPTVSKVLNGRSGVSDETRARVEELIQRYGYRKPPKNRSKL
VELVFRELENMWAVEIIRGVERVARRNKVSVLVSEFGLQDTPARNIDDTVGRRPQCVLSVAQLSEKERAQLTAKGIPFVV
FDPNEELPDDVPFVGATNWRGGHAATRHLVGLGHRRIAMISGPDHPFCLARMAGYTSALTEAGIPVDPDLVVKTLLTRED
GCTAARDLLSRPERPTAVFTANDMQAMGVYRAARELGLSIPQDLSVVGFDDVPAVAWVDPPLTTVHQPLAEMAVAATEMA
LALGRGEDVPQMGVEIATTLTIRESTAPPKS

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=646084 OG734_RS45595 WP_330293260.1 10455367..10456422(+) (cytR) [Streptomyces sp. NBC_00576]
GTGCCGGACAGCCGATCAGACAGACCTTCCACGGACGCGACCGAAGAGCGGAGCACGAGGGGTGAAGGACCGGCAGCGGT
CACCATCGCGTACATCGCCGAGTCCGCCGGCGTCTCGGTGCCCACGGTGTCGAAGGTGCTCAACGGCCGGTCGGGTGTGT
CGGACGAGACGCGGGCCCGCGTCGAGGAACTGATCCAGCGGTACGGCTACCGCAAGCCGCCGAAGAACCGCAGCAAACTC
GTGGAGCTGGTCTTCCGCGAGCTGGAGAACATGTGGGCCGTGGAGATCATCCGCGGTGTCGAACGGGTGGCCCGGAGGAA
CAAGGTCAGTGTCCTGGTGTCGGAGTTCGGTCTCCAGGACACGCCGGCCAGGAACATCGACGACACCGTGGGGCGGCGCC
CGCAGTGCGTCCTGTCGGTGGCACAGCTGTCGGAGAAGGAGCGGGCCCAGCTGACGGCGAAGGGCATCCCGTTCGTCGTC
TTCGACCCCAATGAGGAGCTCCCCGACGACGTGCCGTTCGTGGGCGCCACCAACTGGAGGGGCGGCCACGCCGCGACCCG
GCACCTGGTCGGACTGGGGCACCGGCGTATCGCCATGATCAGCGGGCCTGATCATCCTTTCTGTCTCGCGCGGATGGCCG
GCTACACCTCCGCACTCACAGAGGCCGGGATACCGGTCGACCCGGACCTGGTGGTCAAGACCCTCCTCACCCGAGAGGAC
GGCTGCACGGCGGCACGCGACCTGCTCTCCCGGCCCGAGCGTCCCACCGCCGTCTTCACTGCCAACGACATGCAGGCCAT
GGGCGTCTACCGGGCCGCGCGCGAGCTCGGGCTGAGTATCCCGCAGGACCTGAGCGTGGTGGGCTTCGACGACGTACCGG
CCGTGGCCTGGGTGGATCCGCCCCTGACCACGGTCCACCAGCCCTTGGCGGAGATGGCGGTGGCCGCTACCGAAATGGCA
CTGGCACTGGGCCGCGGCGAGGACGTGCCCCAGATGGGAGTGGAGATCGCCACCACCCTCACCATCCGCGAGAGCACGGC
CCCGCCGAAGAGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(28-71)

Periplasmic binding protein-like domain (Peripla_BP_3)

(186-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

37.243

97.151

0.362