Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG734_RS44385 Genome accession   NZ_CP107780
Coordinates   10203281..10203946 (-) Length   221 a.a.
NCBI ID   WP_330293048.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00576     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 10198281..10208946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG734_RS44370 (OG734_44425) - 10198743..10199723 (+) 981 WP_330293045.1 xanthine dehydrogenase family protein subunit M -
  OG734_RS44375 (OG734_44430) - 10199720..10201906 (+) 2187 WP_330293046.1 xanthine dehydrogenase family protein molybdopterin-binding subunit -
  OG734_RS44380 (OG734_44435) - 10202057..10203217 (+) 1161 WP_330293047.1 XdhC/CoxI family protein -
  OG734_RS44385 (OG734_44440) vraR 10203281..10203946 (-) 666 WP_330293048.1 response regulator transcription factor Regulator
  OG734_RS44390 (OG734_44445) - 10203943..10205268 (-) 1326 WP_330293049.1 histidine kinase -
  OG734_RS44395 (OG734_44450) - 10205265..10205651 (-) 387 WP_330293050.1 hypothetical protein -
  OG734_RS44400 (OG734_44455) - 10205819..10206274 (-) 456 WP_330293051.1 MarR family transcriptional regulator -
  OG734_RS44405 (OG734_44460) - 10206428..10206883 (-) 456 WP_330293052.1 MarR family transcriptional regulator -
  OG734_RS44410 (OG734_44465) - 10206957..10207763 (+) 807 WP_330293053.1 SDR family NAD(P)-dependent oxidoreductase -
  OG734_RS44415 (OG734_44470) - 10208229..10208372 (+) 144 WP_330293054.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23699.28 Da        Isoelectric Point: 5.0799

>NTDB_id=646077 OG734_RS44385 WP_330293048.1 10203281..10203946(-) (vraR) [Streptomyces sp. NBC_00576]
MTIRVLLADDQALVRTSFRMLIESEPDMSVVGEAATGEEAVELARSTLADVVLMDIRMPDMDGLAATRAISADEDLAGVR
VLILTTFEADEHVFQALRAGASGFLGKGVELSYLLDAIRLIAHGEALLSPMATKALIAHYLATPDRTSAPAPELTSLTER
ERQVLVLVAAGLSNNAIAEQLHVSPWTAKTHVNRIMTKLGVRDRAQLVVIAYQTGHAHPGA

Nucleotide


Download         Length: 666 bp        

>NTDB_id=646077 OG734_RS44385 WP_330293048.1 10203281..10203946(-) (vraR) [Streptomyces sp. NBC_00576]
ATGACCATCCGCGTTCTGCTCGCCGACGACCAGGCCCTCGTCCGTACCAGCTTCCGCATGCTCATCGAGTCGGAGCCGGA
CATGTCGGTCGTCGGAGAGGCGGCGACGGGCGAAGAGGCGGTCGAACTGGCCCGCAGCACCCTTGCCGATGTCGTGCTGA
TGGACATCCGGATGCCCGACATGGACGGCCTCGCCGCCACGCGCGCCATCTCGGCGGACGAGGACCTCGCAGGCGTACGG
GTGCTGATCCTGACGACCTTCGAGGCCGACGAGCACGTCTTCCAGGCGCTGCGTGCCGGGGCCAGCGGATTCCTCGGAAA
AGGCGTCGAGCTCTCCTATCTCCTCGACGCCATCCGGCTGATCGCCCACGGAGAGGCGCTGCTGTCACCCATGGCGACCA
AGGCACTCATCGCCCACTACCTGGCCACACCAGACAGGACGAGCGCTCCGGCCCCGGAACTGACGAGCCTTACCGAACGC
GAGCGCCAAGTACTCGTCCTCGTGGCCGCCGGCCTCTCCAACAACGCCATCGCCGAACAGCTCCACGTCTCGCCCTGGAC
CGCCAAGACCCACGTGAACCGCATCATGACCAAGCTCGGCGTCCGCGACCGCGCCCAACTCGTCGTGATCGCCTACCAGA
CCGGCCACGCCCACCCCGGCGCATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-211)

Response regulator receiver domain (Response_reg)

(5-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.498

96.38

0.371