Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SPYOHK_RS00385 Genome accession   NZ_AFRY01000001
Coordinates   1825171..1825884 (+) Length   237 a.a.
NCBI ID   WP_002991336.1    Uniprot ID   -
Organism   Streptococcus pyogenes HKU QMH11M0907901     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1820171..1830884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPYOHK_RS00395 (SPYOHK_08925) treC 1821241..1822869 (-) 1629 WP_002991331.1 alpha,alpha-phosphotrehalase -
  SPYOHK_RS00390 (SPYOHK_08930) treP 1822936..1824960 (-) 2025 WP_002991333.1 PTS system trehalose-specific EIIBC component -
  SPYOHK_RS00385 (SPYOHK_08935) treR 1825171..1825884 (+) 714 WP_002991336.1 trehalose operon repressor Regulator
  SPYOHK_RS00380 (SPYOHK_08940) - 1826163..1826501 (-) 339 WP_002991339.1 winged helix-turn-helix transcriptional regulator -
  SPYOHK_RS00375 (SPYOHK_08945) - 1826687..1827535 (+) 849 Protein_1737 VOC family protein -
  SPYOHK_RS00370 (SPYOHK_08950) yaaA 1827577..1828308 (+) 732 WP_002991342.1 peroxide stress protein YaaA -
  SPYOHK_RS00365 (SPYOHK_08955) nrdG 1828482..1829096 (-) 615 WP_002991344.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  SPYOHK_RS00360 (SPYOHK_08960) - 1829096..1829605 (-) 510 WP_002991345.1 GNAT family N-acetyltransferase -
  SPYOHK_RS00355 (SPYOHK_08965) - 1829614..1830549 (-) 936 WP_002991347.1 Gfo/Idh/MocA family protein -
  SPYOHK_RS10100 (SPYOHK_08970) - 1830578..1830724 (-) 147 WP_002982210.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27608.78 Da        Isoelectric Point: 9.6226

>NTDB_id=64604 SPYOHK_RS00385 WP_002991336.1 1825171..1825884(+) (treR) [Streptococcus pyogenes HKU QMH11M0907901]
MTKYERIYKDLETKINKDFYKEGDFLPTEIELSQQYQASRDTVRKALSLLTKAGLILKKQGRGTQVIKHHQIMFPISELT
SYQELVSYSNLDSKTNVIAIDKLIVDETLSKLTGFSKNSLVWRVTRQRVVEGVASVLDIDYLSKTLVPIMTREIAEHSIY
QYLEKELHLAIDFALKEVTIDQITDRDKILLDLGSDQHVVSVKSKVYLSNNNQFQFTESRHKLEKFKFLDFSRRRPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=64604 SPYOHK_RS00385 WP_002991336.1 1825171..1825884(+) (treR) [Streptococcus pyogenes HKU QMH11M0907901]
ATGACAAAGTATGAACGTATTTATAAAGACCTCGAAACAAAAATAAACAAAGACTTTTACAAAGAAGGGGATTTTTTACC
TACTGAAATAGAATTGAGTCAACAATACCAAGCTAGCCGAGATACCGTCCGCAAGGCTCTCTCACTTCTCACAAAGGCAG
GTCTTATCCTCAAAAAACAAGGACGTGGCACCCAAGTGATTAAACATCATCAGATCATGTTCCCTATCTCAGAACTAACT
AGTTATCAGGAACTCGTCTCTTACTCAAATCTAGATTCTAAGACCAACGTCATTGCCATTGATAAACTGATTGTGGATGA
GACACTTTCAAAATTGACCGGTTTTAGCAAAAACAGCTTGGTCTGGCGTGTTACGCGCCAACGCGTTGTTGAGGGTGTGG
CTTCCGTCTTAGACATTGATTACCTTAGTAAAACTTTGGTGCCAATAATGACAAGGGAAATCGCAGAGCATTCTATTTAT
CAATATTTGGAAAAGGAACTCCATCTCGCCATTGACTTTGCCCTCAAAGAGGTTACCATTGACCAAATAACCGATCGTGA
TAAAATTTTACTTGACCTTGGATCAGACCAACATGTTGTTTCCGTCAAATCCAAAGTTTACCTTTCCAATAATAACCAAT
TCCAATTCACCGAGAGTCGCCATAAACTGGAAAAATTTAAATTTTTAGATTTTTCTCGGCGCAGACCAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

68.376

98.734

0.675

Multiple sequence alignment