Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG734_RS18705 Genome accession   NZ_CP107780
Coordinates   4402874..4403875 (-) Length   333 a.a.
NCBI ID   WP_330288649.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00576     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4397874..4408875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG734_RS18685 (OG734_18720) - 4398113..4398874 (-) 762 WP_330288646.1 DeoR/GlpR family DNA-binding transcription regulator -
  OG734_RS18690 (OG734_18725) - 4399085..4400590 (-) 1506 WP_330288647.1 MFS transporter -
  OG734_RS18695 (OG734_18730) - 4400653..4401618 (+) 966 WP_330288648.1 YafY family protein -
  OG734_RS18700 (OG734_18735) - 4401657..4402238 (-) 582 WP_330293707.1 TetR family transcriptional regulator -
  OG734_RS18705 (OG734_18740) rpoS 4402874..4403875 (-) 1002 WP_330288649.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG734_RS18710 (OG734_18745) - 4404065..4404583 (+) 519 WP_330288650.1 N-acetyltransferase family protein -
  OG734_RS18715 (OG734_18750) - 4404702..4405493 (-) 792 WP_330288651.1 class III extradiol ring-cleavage dioxygenase -
  OG734_RS18720 (OG734_18755) - 4405627..4406136 (+) 510 WP_330288652.1 MarR family transcriptional regulator -
  OG734_RS18725 (OG734_18760) - 4406250..4407782 (-) 1533 WP_330288653.1 MFS transporter -
  OG734_RS18730 (OG734_18765) - 4407959..4408600 (-) 642 WP_330288654.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 37001.87 Da        Isoelectric Point: 5.3866

>NTDB_id=646033 OG734_RS18705 WP_330288649.1 4402874..4403875(-) (rpoS) [Streptomyces sp. NBC_00576]
MATRAVARRTSSATGGTVGGARSVRAHGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVFARQILDGEAEAKA
DATVPELEALVAESERAKDIFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQA
ITRSIADQSRTIRLPVHLVEELGRIRRVQREFNRKNGRDPEPAEIAAELDTNAARVVDVLDWARDPVSLNMSVDDDGDTQ
FGDLLEDTSAVSPEQSVMTLLRSEELDDLIGRLDQRTASIIKMRYGIVDGRERTLTEVGKEHGLTRERIRQIEKHALLEL
KKLARDTGFDAAA

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=646033 OG734_RS18705 WP_330288649.1 4402874..4403875(-) (rpoS) [Streptomyces sp. NBC_00576]
ATGGCAACCCGTGCCGTCGCCCGTCGTACGTCTTCCGCCACCGGCGGGACCGTCGGCGGCGCACGCAGTGTTCGCGCCCA
TGGCGGCGAGATCGCCGACCGCGACCTGGTCGGCATGTACTTGGACGAGATAGCTCGAACCCCGTTGCTCGACGCCGCGA
AGGAGGTCGAGCTGTCGCAGACCATCGAGGCCGGTGTGTTCGCGCGCCAGATCCTCGACGGCGAGGCAGAAGCGAAGGCG
GACGCCACCGTCCCGGAGCTGGAGGCGCTCGTCGCCGAGAGCGAGCGGGCCAAGGACATCTTCATCCGCTCCAACCTCCG
GCTGGTCGTCGCCGTGGCGCGCCGTTACCCCCGCAGCGGCCTGCCCCTCCTCGACCTGATCCAGGAGGGCAACGCCGGCC
TGGTGCGCGCGGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCCACCTGGTGGATCCGTCAGGCC
ATCACCCGTTCCATAGCCGACCAGTCGCGCACGATCCGCCTCCCCGTCCATTTGGTCGAGGAACTGGGCCGGATCCGGCG
CGTGCAGCGCGAGTTCAACCGTAAGAACGGGCGGGACCCGGAGCCTGCGGAGATCGCGGCCGAACTGGACACGAACGCGG
CGCGGGTGGTCGACGTCCTGGACTGGGCCCGAGACCCGGTCTCGCTGAACATGTCGGTTGACGACGATGGCGACACCCAG
TTCGGCGACCTCCTGGAGGACACGTCGGCGGTCTCGCCGGAGCAGTCCGTCATGACCCTTCTGCGCAGCGAGGAACTGGA
CGACCTGATCGGCCGCCTCGACCAGCGCACGGCCTCCATCATCAAGATGCGGTACGGCATCGTCGACGGCCGGGAGCGCA
CGCTGACCGAGGTCGGCAAGGAGCACGGGCTCACCCGTGAGCGGATTCGGCAGATCGAGAAGCATGCGTTGCTGGAACTC
AAGAAGCTGGCACGGGACACGGGGTTCGACGCGGCGGCTTAG

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(101-170)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(35-68)

Sigma-70 region 3 (Sigma70_r3)

(180-256)

Sigma-70, region 4 (Sigma70_r4)

(270-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.134

89.79

0.36