Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG734_RS12240 Genome accession   NZ_CP107780
Coordinates   2955805..2957004 (-) Length   399 a.a.
NCBI ID   WP_330287523.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00576     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2950805..2962004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG734_RS12220 (OG734_12255) - 2951131..2951469 (-) 339 WP_006379495.1 P-II family nitrogen regulator -
  OG734_RS12225 (OG734_12260) - 2951466..2952809 (-) 1344 WP_330287520.1 ammonium transporter -
  OG734_RS12230 (OG734_12265) - 2953120..2954595 (-) 1476 WP_330287521.1 hypothetical protein -
  OG734_RS12235 (OG734_12270) - 2955053..2955715 (+) 663 WP_330287522.1 bifunctional DNA primase/polymerase -
  OG734_RS12240 (OG734_12275) pilA 2955805..2957004 (-) 1200 WP_330287523.1 signal recognition particle-docking protein FtsY Machinery gene
  OG734_RS12245 (OG734_12280) - 2957328..2958299 (+) 972 WP_330287524.1 LLM class flavin-dependent oxidoreductase -
  OG734_RS12250 (OG734_12285) - 2958420..2959838 (-) 1419 WP_330287525.1 sugar porter family MFS transporter -

Sequence

Protein


Download         Length: 399 a.a.        Molecular weight: 42064.13 Da        Isoelectric Point: 4.5180

>NTDB_id=646015 OG734_RS12240 WP_330287523.1 2955805..2957004(-) (pilA) [Streptomyces sp. NBC_00576]
METVILAVVIAVVVLGVLGGLVVGSRRKKPLPPAPPTTPDLTAPPAEPHVGDEAETPRDEPRRTIEEVDLPEGADASSVA
VEEPPAPVIEVPEPTAGRLVRLRARLSRSQNALGKGLLTLLAREHLDDDTWEEVEDTLLTADVGVQPTQELVERLRERVK
VLGTRTPADLRGLLREELLHILEPGFDRTVKTDSNLDTPGIVMVVGVNGTGKTTTTGKLARVLVADGKNVVLGAADTFRA
AAADQLQTWGDRVGARTVRGPEGGDPASIAFDAVKEGIQAGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHAPLDEVL
LVLDATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGADDLAPFEPEAFVDALIGE

Nucleotide


Download         Length: 1200 bp        

>NTDB_id=646015 OG734_RS12240 WP_330287523.1 2955805..2957004(-) (pilA) [Streptomyces sp. NBC_00576]
ATGGAAACCGTCATCCTTGCTGTAGTCATCGCCGTGGTCGTGCTCGGTGTGCTCGGTGGGCTCGTCGTCGGCAGCCGCAG
GAAGAAGCCGCTGCCCCCGGCGCCCCCCACGACACCCGACCTCACCGCCCCTCCGGCCGAGCCGCACGTCGGCGACGAGG
CCGAGACGCCGCGCGACGAACCGCGCCGCACGATAGAGGAGGTGGACCTCCCGGAGGGCGCGGACGCCTCGTCCGTCGCC
GTCGAGGAACCTCCCGCCCCCGTGATCGAGGTGCCGGAGCCCACCGCCGGGCGGCTGGTCCGGCTGCGCGCCCGGCTCTC
CCGGTCGCAGAACGCGCTCGGCAAGGGGCTGCTCACGCTCCTCGCGCGCGAGCACCTCGACGACGACACCTGGGAGGAGG
TCGAGGACACCCTCCTCACCGCCGACGTCGGCGTCCAGCCCACTCAGGAACTCGTCGAGCGGCTGCGCGAGCGCGTGAAG
GTGCTCGGCACCCGTACGCCCGCCGACCTGCGCGGGCTGCTGCGCGAGGAACTGCTCCACATCCTCGAACCCGGGTTCGA
CCGGACTGTGAAGACCGACTCGAACCTCGACACCCCGGGCATCGTGATGGTCGTCGGAGTCAACGGCACCGGCAAGACCA
CCACCACCGGCAAGCTGGCGCGCGTGCTCGTCGCCGACGGGAAGAACGTGGTTCTCGGTGCCGCCGACACCTTCCGGGCC
GCCGCCGCCGATCAGCTCCAGACCTGGGGCGACCGGGTGGGGGCGCGTACCGTGCGCGGTCCCGAGGGTGGTGACCCCGC
GTCGATCGCCTTCGACGCCGTCAAGGAGGGCATCCAGGCCGGCGCCGATGTCGTGCTGATCGACACCGCCGGGCGGCTGC
ACACCAAGACCGGGCTCATGGACGAGCTCGGCAAGGTCAAGCGCGTCGTCGAGAAGCACGCCCCGCTGGACGAGGTGCTG
CTCGTGCTGGACGCCACGACCGGGCAGAACGGGCTCGTCCAGGCCCGCGTCTTCGCCGAGGTCGTCGACATCACCGGCAT
CGTGCTCACCAAGCTCGACGGCACCGCCAAGGGCGGCATCGTCATCGCCGTACAGCGCGAGCTGGGCGTGCCGGTGAAGC
TGATCGGGCTCGGCGAGGGGGCCGACGATCTGGCGCCGTTCGAGCCGGAGGCGTTTGTTGACGCCCTTATCGGGGAGTGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(201-397)

SRP54-type protein, helical bundle domain (SRP54_N)

(113-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

42.241

87.218

0.368