Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG852_RS33200 Genome accession   NZ_CP107772
Coordinates   7338392..7340320 (-) Length   642 a.a.
NCBI ID   WP_330349879.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00582     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 7333392..7345320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG852_RS33185 (OG852_33195) - 7333897..7335162 (+) 1266 WP_330349878.1 FAD-dependent oxidoreductase -
  OG852_RS33190 (OG852_33200) dnaG 7335192..7337096 (+) 1905 WP_133909573.1 DNA primase -
  OG852_RS33195 (OG852_33205) - 7337212..7338363 (+) 1152 WP_133909574.1 RNA polymerase sigma factor -
  OG852_RS33200 (OG852_33210) rcrQ 7338392..7340320 (-) 1929 WP_330349879.1 ABC transporter ATP-binding protein Regulator
  OG852_RS33205 (OG852_33215) rcrP 7340320..7342053 (-) 1734 WP_133909576.1 ABC transporter ATP-binding protein Regulator
  OG852_RS33210 (OG852_33220) - 7342264..7343718 (-) 1455 WP_133909577.1 FGGY family carbohydrate kinase -
  OG852_RS33215 (OG852_33225) - 7343869..7344174 (-) 306 WP_133909578.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69834.30 Da        Isoelectric Point: 5.9153

>NTDB_id=645976 OG852_RS33200 WP_330349879.1 7338392..7340320(-) (rcrQ) [Streptomyces sp. NBC_00582]
MAGPMGRMMAGTGPDNRSLDFKVSGRRLLTQFKPERLTLYGMLFCVVISVGLNVVGPKILGKATDLVFAGIIGRQMPDGA
SKEQVLDSMRERGEGQVADMLKSTDFTPGKGVDFDQVGEVLLFAVGVFLVAGLLMAVATRLVNRAVNRTMFRMREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIQQTLQQSMGQLINSLLTIIGVLAMMFWVSWLLALVALVTVPLSAVVAAKVGK
RSQPHFVQQWRTTGKLNAHIEEMYTGHTLVKVFGRQEQSARQFAEQNEALYEAGFRAQFNSGIMQPLMFFVSNINYVLVA
VVGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQQADPAAGAKPEELRGRVALD
HVSFRYDPEKPLIEDLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVSGGRITLDGVDIARMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASREVTRGEIEEAARAAHADRFVRTLPEGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHAELLAAGGAYARLYQAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=645976 OG852_RS33200 WP_330349879.1 7338392..7340320(-) (rcrQ) [Streptomyces sp. NBC_00582]
ATGGCCGGGCCCATGGGGCGCATGATGGCCGGCACTGGTCCCGACAACCGCTCGCTGGACTTCAAGGTGTCCGGCAGGCG
GCTGCTCACCCAGTTCAAGCCGGAGCGGCTCACCCTCTACGGGATGCTCTTCTGCGTGGTGATCAGCGTCGGCCTGAACG
TGGTCGGCCCGAAGATCCTCGGCAAGGCGACCGACCTGGTCTTCGCGGGCATCATCGGACGGCAGATGCCGGACGGCGCG
AGCAAGGAGCAGGTGCTCGACTCGATGCGGGAGCGCGGCGAGGGTCAGGTCGCCGACATGCTCAAGAGCACCGACTTCAC
CCCCGGCAAGGGCGTCGACTTCGACCAGGTCGGTGAGGTCCTGCTGTTCGCGGTCGGGGTGTTCCTCGTCGCCGGTCTGC
TGATGGCGGTGGCGACGCGCCTGGTCAACCGGGCCGTCAACCGCACGATGTTCCGGATGCGCGAGGACGTGCAGACGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGTCAGCGCGGCGAGGTGCTCTCCCGCGCCACGAACGACATCGACAA
CATCCAGCAGACGCTCCAGCAGTCGATGGGGCAGCTCATCAACTCGCTGCTGACGATCATCGGCGTGCTGGCGATGATGT
TCTGGGTCTCCTGGCTGCTCGCGCTGGTCGCGCTGGTGACGGTGCCGCTGTCGGCGGTCGTCGCGGCGAAGGTGGGCAAG
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGCACCACCGGCAAGCTGAACGCGCACATCGAGGAGATGTACACCGGCCA
CACGCTGGTGAAGGTGTTCGGCCGTCAGGAGCAGTCGGCGCGGCAGTTCGCCGAGCAGAACGAGGCGCTGTACGAGGCCG
GGTTCAGGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGTTCTTCGTGTCGAACATCAACTATGTGCTGGTGGCG
GTGGTCGGTGGTCTGCGCGTGGCGTCGGGCGCCCTGTCCATCGGTGATGTGCAGGCCTTCATCCAGTACTCCCGTCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCCGGTGTCGCCTCCGCCGAGCGGATCTTCGAAC
TCCTCGACGCGGAGGAGCAGCAGGCCGACCCGGCGGCGGGCGCCAAGCCGGAGGAACTGCGCGGGCGGGTCGCGCTGGAC
CACGTCTCGTTCCGCTACGACCCCGAGAAGCCGCTCATCGAGGACCTCTCGCTGACGGTGGAACCGGGCCACACGGTCGC
GATCGTGGGTCCGACCGGCGCCGGCAAGACCACACTGGTCAACCTGCTGATGCGGTTCTACGACGTCTCGGGCGGGCGGA
TCACCCTCGACGGCGTGGACATCGCCCGGATGTCCCGGGACGAGCTGCGCGCCGGGATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACGATCGCGGAGAACATCGCGTACGGCGCCTCGCGCGAGGTCACCCGGGGCGAGATCGAGGAGGC
GGCGCGGGCGGCCCACGCGGACCGGTTCGTGCGGACGCTGCCCGAGGGGTACGACACGGTGATCGACGACGAGGGCAGTG
GGGTCAGCGCGGGTGAGAAGCAGCTGATCACGATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTCCTCGACGAG
GCGACCTCCTCGGTCGACACCCGCACGGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTGGCGCACGGCCGGACGTCGTT
CGTCATCGCCCACCGTCTCTCCACCATCCGGGACGCGGACACCATCCTGGTGATGGAGAACGGCTCGATCGTGGAGCAGG
GCGCGCACGCGGAGCTGCTGGCGGCGGGCGGGGCGTACGCCCGGCTGTACCAGGCGCAGTTCGCGCAGGCGGTGGCGGAG
GTGGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(42-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.065

96.417

0.386