Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG852_RS17875 Genome accession   NZ_CP107772
Coordinates   4087239..4087856 (-) Length   205 a.a.
NCBI ID   WP_133912579.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00582     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4082239..4092856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG852_RS17850 (OG852_17865) - 4083024..4083470 (+) 447 WP_133912576.1 ATP-binding protein -
  OG852_RS17855 (OG852_17870) - 4083598..4084695 (-) 1098 WP_330348425.1 bifunctional succinyldiaminopimelate transaminase/glutamate-prephenate aminotransferase -
  OG852_RS17860 (OG852_17875) fdxA 4084837..4085157 (-) 321 WP_030961637.1 ferredoxin -
  OG852_RS17865 (OG852_17880) - 4085298..4086293 (+) 996 WP_330351458.1 GNAT family N-acetyltransferase -
  OG852_RS17870 (OG852_17885) - 4086290..4087132 (+) 843 WP_133912578.1 transglutaminase-like domain-containing protein -
  OG852_RS17875 (OG852_17890) vraR 4087239..4087856 (-) 618 WP_133912579.1 response regulator transcription factor Regulator
  OG852_RS17880 (OG852_17895) - 4087853..4089052 (-) 1200 WP_330351459.1 histidine kinase -
  OG852_RS17885 (OG852_17900) - 4089058..4089798 (-) 741 WP_330348426.1 ABC transporter permease -
  OG852_RS17890 (OG852_17905) - 4089795..4090730 (-) 936 WP_208117155.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21748.93 Da        Isoelectric Point: 4.8331

>NTDB_id=645943 OG852_RS17875 WP_133912579.1 4087239..4087856(-) (vraR) [Streptomyces sp. NBC_00582]
MSDGTIKVLLAEDQSMVREALAALLGLEDDIEVVAQVARGDEVLAAARAHDIDVALLDIEMPGCTGIEAAARLHQELPRL
KLVVLTTFGRPGYLRSAMEAGADAFLVKDAPAAQLAQAVRKVLAGERVIDPTLAAAALAEGANPLTDREREILRAAADGS
TNAELAAELHLSQGTVRNYLSTAIQKLAARNRAEAVRIAREKGWL

Nucleotide


Download         Length: 618 bp        

>NTDB_id=645943 OG852_RS17875 WP_133912579.1 4087239..4087856(-) (vraR) [Streptomyces sp. NBC_00582]
ATGAGTGACGGCACGATCAAGGTCCTCCTCGCGGAGGACCAGTCGATGGTCCGCGAGGCGCTGGCGGCCCTCCTCGGCCT
GGAGGACGACATCGAGGTGGTCGCGCAGGTGGCCCGCGGCGACGAGGTCCTCGCGGCCGCCCGCGCCCACGACATCGACG
TGGCCCTCCTCGACATCGAGATGCCCGGCTGCACCGGTATCGAGGCGGCCGCCCGGCTCCACCAGGAGTTGCCGCGCCTG
AAACTGGTCGTCCTCACGACCTTCGGCCGCCCCGGCTACCTCCGCAGCGCCATGGAGGCGGGCGCGGACGCCTTCCTGGT
GAAGGACGCCCCGGCGGCCCAACTCGCCCAGGCGGTACGGAAGGTACTGGCCGGGGAGCGGGTCATCGACCCCACCCTCG
CGGCAGCGGCCCTCGCGGAGGGCGCCAACCCCCTGACCGACCGTGAGAGGGAGATCCTCCGCGCGGCGGCCGACGGCTCG
ACGAACGCCGAACTGGCCGCGGAACTCCACCTGTCCCAGGGAACGGTCCGCAACTACCTCTCGACGGCGATCCAGAAACT
GGCGGCGAGGAACAGGGCGGAAGCGGTACGGATAGCAAGGGAGAAGGGCTGGCTTTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(144-199)

Response regulator receiver domain (Response_reg)

(8-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

35.407

100

0.361