Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   L1A17_RS04290 Genome accession   NZ_CP090886
Coordinates   835576..836613 (+) Length   345 a.a.
NCBI ID   WP_000727277.1    Uniprot ID   A0A0B7LHQ0
Organism   Streptococcus pneumoniae strain NP7513     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 830576..841613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1A17_RS04255 (L1A17_04255) yidC 830611..831537 (-) 927 WP_000835941.1 membrane protein insertase YidC -
  L1A17_RS04260 (L1A17_04260) - 831615..831893 (-) 279 WP_001174613.1 acylphosphatase -
  L1A17_RS04265 (L1A17_04265) - 831927..832667 (+) 741 WP_000152678.1 RNA methyltransferase -
  L1A17_RS04270 (L1A17_04270) - 832723..833406 (+) 684 WP_001016910.1 Bax inhibitor-1/YccA family protein -
  L1A17_RS04275 (L1A17_04275) asnA 833518..834510 (+) 993 WP_000747993.1 aspartate--ammonia ligase -
  L1A17_RS04280 (L1A17_04280) rsmD 834575..835114 (+) 540 WP_000706963.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  L1A17_RS04285 (L1A17_04285) coaD 835104..835592 (+) 489 WP_001280769.1 pantetheine-phosphate adenylyltransferase -
  L1A17_RS04290 (L1A17_04290) sepM 835576..836613 (+) 1038 WP_000727277.1 SepM family pheromone-processing serine protease Regulator
  L1A17_RS04295 (L1A17_04295) - 836671..836901 (+) 231 WP_000250384.1 DUF1146 family protein -
  L1A17_RS04300 (L1A17_04300) murA 836925..838208 (+) 1284 WP_000358028.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  L1A17_RS04305 (L1A17_04305) - 838201..838389 (+) 189 WP_001813390.1 DNA-directed RNA polymerase subunit beta -
  L1A17_RS04310 (L1A17_04310) endA 838428..839252 (+) 825 WP_001036787.1 DNA-entry nuclease EndA Machinery gene
  L1A17_RS04315 (L1A17_04315) - 839543..840874 (+) 1332 WP_000390039.1 hemolysin family protein -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 37537.57 Da        Isoelectric Point: 5.0724

>NTDB_id=645916 L1A17_RS04290 WP_000727277.1 835576..836613(+) (sepM) [Streptococcus pneumoniae strain NP7513]
MKKKIRWPLYVIAALIVTFLAFVVPLPYYIEVPGGSEDIRQVLKVNDTEDKEAGAYQFVTVGVQHATLAHMIYAWLTPFT
DIRSAQETTGGSSDVEFMRINQFYMQTSQNMAKYQGLKTAGKDIELKYFGVYVLNVTDNSTFKGILNISDTVTAVNDQTF
DSSKDLIDYVSSQKLGDSVKVTYEEDGQTKSAEGKIITLENGKNGIGIGLIDRTEVISNVPISFSTAGIGGPSAGLMFSL
AIYTQIAHPDLRNGRIVAGTGTIDRDGNVGDIGGIDKKVVASARAGAAIFFAPDNPVSEEEQKAHPDAKNNYQTALEAAK
TIKTDMKIVPVKTLQDAIDYLKNNP

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=645916 L1A17_RS04290 WP_000727277.1 835576..836613(+) (sepM) [Streptococcus pneumoniae strain NP7513]
ATGAAAAAAAAGATTAGATGGCCCTTATACGTCATTGCGGCCTTGATTGTGACCTTCTTGGCATTTGTAGTGCCCTTGCC
TTATTATATAGAGGTTCCAGGTGGTTCGGAAGATATTCGCCAAGTCCTTAAAGTAAATGACACAGAAGATAAGGAAGCTG
GTGCCTATCAATTCGTTACGGTTGGTGTTCAACATGCCACTTTAGCTCATATGATTTATGCTTGGTTGACACCTTTTACA
GATATTCGTAGTGCTCAGGAGACTACAGGTGGTTCTTCCGATGTTGAATTTATGCGAATCAATCAATTCTACATGCAAAC
ATCACAAAATATGGCCAAGTATCAAGGACTAAAAACAGCTGGTAAGGATATCGAACTCAAGTACTTTGGAGTTTATGTTT
TGAATGTGACGGATAATTCAACCTTTAAAGGGATTCTCAATATCTCTGATACAGTCACAGCAGTCAATGATCAGACCTTT
GATAGTTCCAAAGACTTGATTGATTACGTCAGTTCTCAAAAATTAGGGGATTCCGTCAAGGTCACCTATGAAGAGGATGG
GCAAACCAAGTCTGCAGAAGGAAAAATCATCACCTTGGAAAATGGCAAAAATGGAATTGGAATCGGCTTGATTGACCGTA
CAGAGGTAATCAGCAATGTCCCAATTAGCTTTTCAACAGCTGGTATTGGCGGTCCAAGTGCTGGTCTCATGTTTAGTCTA
GCTATCTATACTCAAATAGCTCACCCAGATCTTCGTAATGGTCGTATTGTTGCCGGTACAGGTACCATTGACCGCGATGG
TAATGTGGGAGACATTGGAGGTATTGATAAGAAGGTTGTAGCTTCGGCTAGGGCAGGTGCTGCTATTTTCTTTGCTCCTG
ATAACCCTGTTAGCGAAGAAGAACAAAAGGCGCATCCGGACGCGAAAAACAACTACCAAACAGCCCTAGAAGCGGCTAAA
ACAATCAAGACGGATATGAAAATCGTGCCCGTTAAAACCCTACAAGATGCGATTGATTACTTGAAAAACAATCCCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0B7LHQ0

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

59.649

99.13

0.591