Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHN38_RS27565 Genome accession   NZ_CP107765
Coordinates   5993195..5994928 (-) Length   577 a.a.
NCBI ID   WP_016435411.1    Uniprot ID   A0ABS9XD36
Organism   Streptomyces sp. NBC_00588     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5988195..5999928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN38_RS27555 (OHN38_27535) - 5989930..5991234 (+) 1305 WP_037782467.1 RNA polymerase sigma factor -
  OHN38_RS27560 (OHN38_27540) rcrQ 5991267..5993195 (-) 1929 WP_016435410.1 ABC transporter ATP-binding protein Regulator
  OHN38_RS27565 (OHN38_27545) rcrP 5993195..5994928 (-) 1734 WP_016435411.1 ABC transporter ATP-binding protein Regulator
  OHN38_RS27570 (OHN38_27550) - 5995044..5996501 (-) 1458 WP_016435412.1 FGGY family carbohydrate kinase -
  OHN38_RS27575 (OHN38_27555) - 5996603..5996908 (-) 306 WP_037782862.1 hypothetical protein -
  OHN38_RS27595 (OHN38_27575) - 5997621..5999510 (-) 1890 WP_330283550.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62639.90 Da        Isoelectric Point: 5.7816

>NTDB_id=645890 OHN38_RS27565 WP_016435411.1 5993195..5994928(-) (rcrP) [Streptomyces sp. NBC_00588]
MLIRLLRTYLRPYKKPIALLVLLQFLQTCATLYLPTLNADIIDNGVVKGDTGYILSFGALMIGISLVQVVCNIGAVYYGA
RTASALGRDVRAAVFDRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLALMSFTLMVSAPIMCVGGIVLALGLDVPLSAV
LVAVVPTLGICVTLIVRRLRPLFRAMQTRLDTVNRVLREQITGNRVIRAFVRDEYEKDRFKKANTDLTEMQLATGNMLAL
MFPIVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETSSSVVP
PVAPVTELRRHGHLEIRGAGFRYPGAEEPVLRAIDLVARPGEVTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGTDVA
TLDPKLLAKTVGLVPQKPYLFAGTVATNLRYGNPDATDDELWHALEVAQAKDFVSKLEGGLNAPIAQGGSNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALAEETAEATVVIVAQRVATIRDADRIVVLDEGRVVGTGRHHELMDDN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=645890 OHN38_RS27565 WP_016435411.1 5993195..5994928(-) (rcrP) [Streptomyces sp. NBC_00588]
GTGCTCATACGACTTCTGCGGACCTATCTCAGGCCCTACAAGAAACCCATCGCCCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACCCTGTACCTGCCCACACTGAACGCCGACATCATCGACAACGGTGTCGTGAAGGGTGACACCGGCTACA
TCCTCTCCTTCGGCGCCCTGATGATCGGCATCTCCCTGGTGCAGGTCGTCTGCAACATCGGTGCCGTGTACTACGGCGCC
CGGACCGCCTCGGCCCTCGGCCGGGACGTGCGGGCCGCCGTCTTCGACCGGGTGCAGTCCTTCTCGGCGCGCGAGGTCGG
CCAGTTCGGCGCGCCCTCGCTGATCACCCGTACCACCAATGACGTGCAGCAGGTCCAGATGCTGGCCCTGATGTCGTTCA
CGCTGATGGTGTCCGCGCCGATCATGTGTGTCGGCGGCATCGTGCTGGCCCTCGGCCTGGATGTGCCGCTGTCCGCGGTG
CTGGTCGCGGTGGTGCCGACGCTGGGCATCTGCGTGACGCTGATCGTGCGGCGGCTGCGGCCGTTGTTCCGGGCCATGCA
GACCCGGCTGGACACGGTGAACCGGGTGCTGCGTGAGCAGATCACGGGCAACCGTGTGATCAGGGCGTTCGTCCGGGACG
AGTACGAGAAGGACCGGTTCAAGAAGGCCAACACCGATCTCACCGAGATGCAGCTGGCCACCGGCAACATGCTCGCGCTG
ATGTTCCCGATCGTCATGACCGTGGTGAACCTGTCGTCGATCGCCGTGGTGTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGGATGCAGATCGGCGATCTGACCGCCTTCCTCGCCTATCTCATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGCGCCGAGCGGATCCAGGAGGTCCTGGAGACCTCCTCCAGCGTGGTGCCG
CCGGTGGCGCCGGTCACCGAGCTGCGCCGGCACGGGCATCTGGAGATCCGCGGCGCCGGGTTCCGCTACCCCGGTGCCGA
GGAGCCCGTGCTCCGGGCGATCGACCTGGTGGCCCGGCCCGGCGAGGTGACCGCCGTGATCGGTTCGACCGGCAGCGGCA
AGTCCACGCTGCTCGGGCTGGTCCCGCGGCTGTTCGACGCGACCGACGGCGAGGTCCTCGTCGACGGCACGGACGTCGCC
ACCCTCGACCCGAAGCTGCTGGCGAAGACGGTCGGTCTCGTACCGCAGAAGCCGTATCTGTTCGCCGGCACGGTGGCGAC
CAATCTGCGCTACGGCAATCCCGACGCCACCGACGACGAGCTGTGGCACGCGCTGGAGGTCGCGCAGGCCAAGGACTTCG
TCAGCAAGCTGGAGGGCGGGCTGAACGCGCCCATCGCCCAGGGCGGTTCGAACGTCTCGGGCGGTCAGCGCCAGCGGCTC
GCCATCGCCCGCACGCTCGTCCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCGACGGA
CGCGGCGCTGCGCGCGGCGCTGGCCGAGGAGACCGCGGAGGCGACCGTCGTCATCGTCGCCCAGCGGGTGGCGACCATCC
GGGACGCCGACCGGATCGTGGTCCTCGACGAGGGCCGGGTCGTCGGCACCGGCCGCCATCACGAGCTGATGGACGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.66

100

0.39