Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHN38_RS27560 Genome accession   NZ_CP107765
Coordinates   5991267..5993195 (-) Length   642 a.a.
NCBI ID   WP_016435410.1    Uniprot ID   A0ABS9XCQ7
Organism   Streptomyces sp. NBC_00588     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5986267..5998195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN38_RS27545 (OHN38_27525) - 5986628..5987893 (+) 1266 WP_016435407.1 FAD-dependent oxidoreductase -
  OHN38_RS27550 (OHN38_27530) dnaG 5987923..5989827 (+) 1905 WP_016435408.1 DNA primase -
  OHN38_RS27555 (OHN38_27535) - 5989930..5991234 (+) 1305 WP_037782467.1 RNA polymerase sigma factor -
  OHN38_RS27560 (OHN38_27540) rcrQ 5991267..5993195 (-) 1929 WP_016435410.1 ABC transporter ATP-binding protein Regulator
  OHN38_RS27565 (OHN38_27545) rcrP 5993195..5994928 (-) 1734 WP_016435411.1 ABC transporter ATP-binding protein Regulator
  OHN38_RS27570 (OHN38_27550) - 5995044..5996501 (-) 1458 WP_016435412.1 FGGY family carbohydrate kinase -
  OHN38_RS27575 (OHN38_27555) - 5996603..5996908 (-) 306 WP_037782862.1 hypothetical protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69834.22 Da        Isoelectric Point: 5.5809

>NTDB_id=645889 OHN38_RS27560 WP_016435410.1 5991267..5993195(-) (rcrQ) [Streptomyces sp. NBC_00588]
MAGPMARMMGQGGPDNRSMDFKGSSKRLISQFRPERVTIYALLLCVVVSVGLSVIGPKILGRATDLVFAGIIGRQMPAGA
SKEQVLDSMRERGQGSIADMLRSTDFTPGQGIDFDAVGRVLLLALCTFAVAGLLMAVATRLVNRTVNRTMFRLREQVQAK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSLLTIIGVLAVMFWVSWLLALVALVTVPLSFLVATRVGK
RSQPHFVQQWRSTGKLNAHIEEMYTGHTLVKVFGRQEESAQQFAEQNDALYEAGFKAQFNSGIMQPLMMCVSNLNYVLVA
VVGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEADPVPGERPEELRGRVELQ
NISFSYDPDKPLIENLSLKAEPGHTVAIVGPTGAGKTTLVNLLMRFYDVSGGRITLDGVDIATMTRDELRSGIGMVLQDT
WLFGGTIAENIAYGASREVTRGEIEEAARAAHADRFIRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGAIVEQGAHTDLLEADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=645889 OHN38_RS27560 WP_016435410.1 5991267..5993195(-) (rcrQ) [Streptomyces sp. NBC_00588]
ATGGCCGGGCCGATGGCGCGGATGATGGGCCAGGGCGGCCCCGACAACCGCTCGATGGACTTCAAGGGGTCGAGCAAACG
GCTGATCTCCCAGTTCAGGCCGGAACGTGTGACGATCTACGCACTGCTGCTGTGCGTGGTGGTCAGCGTCGGCCTCAGCG
TGATCGGGCCGAAGATCCTCGGCAGGGCCACCGACCTGGTCTTCGCGGGGATCATCGGGCGGCAGATGCCGGCCGGGGCG
AGCAAGGAGCAGGTCCTCGACTCGATGCGGGAGCGGGGCCAGGGCAGCATCGCCGACATGCTGCGCAGCACCGACTTCAC
GCCGGGCCAGGGCATCGACTTCGACGCGGTGGGCCGCGTACTGCTGCTCGCGCTGTGCACGTTCGCGGTCGCCGGTCTGC
TGATGGCGGTGGCGACCCGGCTGGTCAACCGGACGGTCAACCGCACGATGTTCCGGCTGCGCGAGCAGGTGCAGGCGAAG
CTGTCGCGCCTTCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGTGAGGTGCTGTCCCGGGCGACCAACGACATCGACAA
CATCGGTCAGACGCTGCAGCAGTCGATGGGCCAGCTGATCAACTCGCTGCTGACCATCATCGGTGTGCTCGCGGTGATGT
TCTGGGTGTCGTGGCTGCTGGCGCTGGTCGCGCTGGTGACCGTGCCGCTGTCGTTCCTCGTCGCCACCCGTGTCGGCAAG
CGCTCGCAGCCGCACTTCGTGCAGCAGTGGCGCTCCACCGGCAAGCTGAACGCCCACATCGAGGAGATGTACACCGGCCA
CACGCTGGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCCCAGCAGTTCGCCGAGCAGAACGACGCGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTGCGTGTCGAACCTCAACTATGTGCTGGTGGCG
GTCGTCGGCGGTCTCAGGGTCGCCTCGGGCGCGCTGTCGATCGGCGATGTGCAGGCCTTCATCCAGTACTCGCGCCAGTT
CTCCATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGCGTGGCCTCGGCCGAGCGGATCTTCGAAC
TCCTGGACGCGGAGGAGCAGGAGGCGGATCCGGTGCCGGGCGAGCGGCCCGAGGAGCTGCGCGGCCGGGTTGAGCTGCAG
AACATCTCCTTCAGCTACGACCCCGACAAGCCGCTGATCGAGAACCTCTCCCTGAAGGCCGAACCGGGGCACACGGTCGC
GATCGTCGGCCCGACGGGCGCCGGCAAGACCACCCTGGTGAACCTGCTCATGCGGTTCTACGACGTCTCCGGCGGGCGCA
TCACCCTCGACGGCGTCGACATCGCGACCATGACCCGGGACGAACTGCGGTCCGGGATCGGCATGGTGCTGCAGGACACC
TGGCTGTTCGGCGGCACGATCGCGGAGAACATCGCCTACGGAGCCTCGCGCGAGGTCACCCGGGGCGAGATCGAGGAGGC
GGCGCGGGCCGCGCACGCCGACCGGTTCATCCGCACGCTGCCCGACGGCTACGACACCGTGATCGACGACGAGGGCTCGG
GTGTCAGCGCCGGTGAGAAGCAGCTCATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTGCTCGACGAG
GCCACCAGCTCCGTCGACACCCGCACCGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTCGCGCACGGGCGTACGTCGTT
CGTGATCGCGCACCGGCTCTCGACGATCCGGGACGCGGACACGATCCTTGTCATGGAGAACGGGGCCATCGTCGAGCAGG
GCGCGCACACCGACCTGCTCGAGGCCGATGGGGCGTATGCGCGGCTGTACAAGGCGCAGTTCGCGCAGGCGGTGGCCGAG
GTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(42-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.252

97.04

0.4