Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHN38_RS14700 Genome accession   NZ_CP107765
Coordinates   3250802..3251416 (-) Length   204 a.a.
NCBI ID   WP_016437813.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00588     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3245802..3256416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN38_RS14675 (OHN38_14665) - 3246673..3247128 (+) 456 WP_016437817.1 hypothetical protein -
  OHN38_RS14680 (OHN38_14670) - 3247203..3248294 (-) 1092 WP_330282341.1 bifunctional succinyldiaminopimelate transaminase/glutamate-prephenate aminotransferase -
  OHN38_RS14685 (OHN38_14675) fdxA 3248398..3248718 (-) 321 WP_003973842.1 ferredoxin -
  OHN38_RS14690 (OHN38_14680) - 3248859..3249869 (+) 1011 WP_330282342.1 GNAT family N-acetyltransferase -
  OHN38_RS14695 (OHN38_14685) - 3249899..3250750 (+) 852 WP_242711343.1 transglutaminase-like domain-containing protein -
  OHN38_RS14700 (OHN38_14690) vraR 3250802..3251416 (-) 615 WP_016437813.1 response regulator transcription factor Regulator
  OHN38_RS14705 (OHN38_14695) - 3251413..3252606 (-) 1194 WP_330285246.1 histidine kinase -
  OHN38_RS14710 (OHN38_14700) - 3252612..3253343 (-) 732 WP_016437811.1 ABC transporter permease -
  OHN38_RS14715 (OHN38_14705) - 3253340..3254290 (-) 951 WP_330282343.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 21648.89 Da        Isoelectric Point: 4.9629

>NTDB_id=645854 OHN38_RS14700 WP_016437813.1 3250802..3251416(-) (vraR) [Streptomyces sp. NBC_00588]
MSPTIKVLLAEDQSMVREALAALLGLEDDIEVVAQVARGDEVLAAVREHAVDVALLDIEMPGCTGIEAAAQVHRSLPEVK
LVVLTTFGRPGYLRSAMEAGADAFLVKDAPAAQLAEAVRKVLAGERVIDPTLAAAALAEGANPLTDREREILRAASDGST
NAELAKALHLSQGTVRNYLSTAIQKLAVRNRAEAVRIAREKGWL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=645854 OHN38_RS14700 WP_016437813.1 3250802..3251416(-) (vraR) [Streptomyces sp. NBC_00588]
ATGAGCCCTACGATCAAGGTCCTGCTCGCCGAGGACCAGTCGATGGTCCGTGAGGCCCTGGCGGCCCTGCTCGGGCTTGA
GGACGACATCGAGGTCGTGGCGCAGGTGGCCCGCGGCGACGAGGTACTGGCGGCGGTGCGCGAGCACGCCGTGGACGTGG
CCCTGCTGGACATCGAGATGCCGGGGTGCACCGGCATCGAGGCGGCCGCCCAGGTCCACCGCTCGCTGCCGGAGGTGAAG
CTGGTCGTCCTCACCACCTTCGGCCGCCCCGGCTACCTGCGCAGCGCCATGGAGGCCGGCGCCGACGCCTTCCTGGTCAA
GGACGCCCCGGCCGCCCAACTCGCCGAGGCCGTACGCAAGGTGCTGGCGGGCGAACGGGTCATCGACCCCACCCTCGCCG
CAGCCGCTCTCGCCGAGGGCGCCAACCCCCTCACCGACCGCGAACGCGAGATCCTCCGCGCCGCCTCCGACGGCTCCACC
AACGCAGAACTGGCAAAAGCCCTCCACCTCTCCCAGGGCACGGTCCGCAACTACCTCTCGACAGCCATCCAAAAACTGGC
GGTACGCAACAGAGCAGAAGCGGTCCGGATCGCACGGGAGAAGGGCTGGCTGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-119)

Bacterial regulatory proteins, luxR family (GerE)

(143-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

35.749

100

0.363