Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   L1A16_RS08625 Genome accession   NZ_CP090885
Coordinates   1697959..1698885 (-) Length   308 a.a.
NCBI ID   WP_000103701.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ND6401     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1692959..1703885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1A16_RS08605 (L1A16_08605) treR 1693680..1694390 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  L1A16_RS08610 (L1A16_08610) - 1694545..1695871 (+) 1327 Protein_1723 transposase -
  L1A16_RS08615 (L1A16_08615) amiF 1695946..1696872 (-) 927 WP_001291296.1 ATP-binding cassette domain-containing protein Regulator
  L1A16_RS08620 (L1A16_08620) amiE 1696883..1697950 (-) 1068 WP_000159554.1 oligopeptide/dipeptide ABC transporter ATP-binding protein Regulator
  L1A16_RS08625 (L1A16_08625) amiD 1697959..1698885 (-) 927 WP_000103701.1 oligopeptide ABC transporter permease OppC Regulator
  L1A16_RS08630 (L1A16_08630) amiC 1698885..1700381 (-) 1497 WP_000759905.1 ABC transporter permease Regulator
  L1A16_RS08635 (L1A16_08635) amiA3 1700448..1702427 (-) 1980 WP_000742230.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34662.82 Da        Isoelectric Point: 9.7939

>NTDB_id=645845 L1A16_RS08625 WP_000103701.1 1697959..1698885(-) (amiD) [Streptococcus pneumoniae strain ND6401]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWKSVFKQFMKKKSTVVMLGILVAIILISFIYPMFSKFDFNDVSKVNDFSVR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGVFVGGIWGISKSVDRVMMEVYNVISNIPPLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAFMIRVQILRYRDLEYNLASRTLGTPTLKIVVKNIMPQLVSVIVTTMTQMLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=645845 L1A16_RS08625 WP_000103701.1 1697959..1698885(-) (amiD) [Streptococcus pneumoniae strain ND6401]
ATGTCTACAATCGATAAAGAAAAATTTCAGTTTGTAAAACGTGACGATTTTGCCTCTGAAACTATTGATGCGCCAGCATA
TTCTTACTGGAAATCAGTGTTTAAACAATTTATGAAGAAAAAATCAACTGTAGTCATGTTGGGAATCTTGGTAGCCATCA
TTTTGATAAGTTTCATCTACCCAATGTTTTCTAAGTTTGATTTCAATGATGTCAGCAAGGTAAACGACTTTAGTGTTCGT
TATATCAAGCCAAATGCGGAGCATTGGTTCGGTACTGACAGTAACGGTAAATCGCTCTTTGACGGTGTCTGGTTCGGAGC
TCGTAACTCCATCCTCATTTCTGTGATTGCGACAGTGATTAACTTGGTTATCGGTGTTTTTGTCGGTGGTATTTGGGGTA
TTTCAAAATCAGTTGACCGTGTCATGATGGAAGTTTACAACGTCATCTCAAACATCCCACCTCTTTTGATTGTTATTGTC
TTGACTTACTCAATCGGAGCTGGATTCTGGAATCTGATTTTTGCCATGAGCGTAACAACATGGATTGGTATTGCCTTCAT
GATCCGTGTGCAAATCTTGCGCTATCGTGACTTGGAATACAACTTGGCGTCACGTACTTTGGGAACACCAACCTTGAAGA
TTGTTGTCAAAAATATCATGCCTCAATTGGTATCTGTTATTGTGACAACCATGACTCAAATGCTTCCAAGCTTTATCTCA
TACGAAGCCTTCTTGTCTTTCTTCGGTCTTGGATTACCGATTACAGTGCCAAGTTTGGGTCGTTTGATTTCGGATTATTC
ACAAAACGTAACAACCAATGCTTACTTGTTCTGGATTCCATTGACAACCCTTGTCTTGGTATCCTTGTCCCTTTTCGTAG
TTGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(124-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.442

100

0.834
  amiD Streptococcus thermophilus LMG 18311

81.169

100

0.812
  amiD Streptococcus thermophilus LMD-9

81.169

100

0.812