Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHN38_RS11340 Genome accession   NZ_CP107765
Coordinates   2505964..2506743 (+) Length   259 a.a.
NCBI ID   WP_016432241.1    Uniprot ID   A0ABS9X7P4
Organism   Streptomyces sp. NBC_00588     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2500964..2511743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN38_RS11325 (OHN38_11315) - 2501151..2501684 (+) 534 WP_330282064.1 TerD family protein -
  OHN38_RS11330 (OHN38_11320) - 2501781..2504678 (-) 2898 WP_016432239.1 vitamin B12-dependent ribonucleotide reductase -
  OHN38_RS11335 (OHN38_11325) nrdR 2504839..2505399 (-) 561 WP_016432240.1 transcriptional regulator NrdR -
  OHN38_RS11340 (OHN38_11330) dinR/lexA 2505964..2506743 (+) 780 WP_016432241.1 transcriptional repressor LexA Regulator
  OHN38_RS11345 (OHN38_11335) - 2506899..2508875 (-) 1977 WP_242707756.1 ATP-dependent DNA helicase -
  OHN38_RS11350 (OHN38_11340) - 2509246..2510088 (-) 843 WP_242707755.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28019.74 Da        Isoelectric Point: 7.0666

>NTDB_id=645837 OHN38_RS11340 WP_016432241.1 2505964..2506743(+) (dinR/lexA) [Streptomyces sp. NBC_00588]
MTTTADSATITAQDRSQGRLEPVHAMNEAVNPEGHKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQSASVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNAAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=645837 OHN38_RS11340 WP_016432241.1 2505964..2506743(+) (dinR/lexA) [Streptomyces sp. NBC_00588]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCCATGAA
CGAAGCCGTGAACCCAGAGGGGCACAAGCGCTCCCTGCCTGGCCGACCTCCAGGCATCCGGGCGGACAGCTCCGGGCTCA
CCGACCGGCAGCGCCGAGTGATCGAGGTCATCAGGGACTCCGTGCAGCGGAGGGGCTACCCGCCGTCGATGCGGGAGATC
GGTCAGGCGGTGGGCCTGTCGAGCACCTCCTCGGTCGCACACCAGCTGATGGCACTGGAGCGCAAGGGGTTCCTGCGGCG
CGATCCGCACCGGCCGCGCGCCTACGAGGTACGCGGCTCCGACCAGAGCGCCTCGGTGCAGCCCACCGACACCGCCGGCA
AGCCCGCCGCGTCGTACGTCCCCCTGGTCGGCCGTATCGCCGCCGGTGGCCCGATCCTCGCCGAGGAGTCGGTCGAGGAC
GTCTTCCCTCTCCCCCGCCAGCTGGTCGGTGACGGCGAACTGTTCGTGCTGAAGGTCGTCGGTGACTCGATGATCGAGGC
CGCCATCTGCGACGGCGACTGGGTCACCGTCCGCCGCCAGCCCGTCGCCGAGAACGGCGACATCGTCGCGGCCATGCTGG
ACGGCGAGGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCACGTCTGGCTCCTCCCGCACAATGCTGCGTACGAGCCG
ATCCCCGGCGACGACGCGACCATCCTCGGCAAGGTGGTGGCAGTGCTGCGCCGCGTATGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(51-114)

Peptidase S24-like (Peptidase_S24)

(141-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.972

81.467

0.375